X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FStockholmFileTest.java;fp=test%2Fjalview%2Fio%2FStockholmFileTest.java;h=85ccdcbf5b67d8d9a7b03f2440401097ef46ef29;hb=beaa6e0c46460e1ddcea461ffee16f5c4fccca08;hp=a16aa075aa3e99f95d58236548ee577ade2b0615;hpb=79b76c7dbb5322cb7b188035fb2fdf676ee974fa;p=jalview.git

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index a16aa07..85ccdcb 100644
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -114,7 +114,12 @@ public class StockholmFileTest
     String toStockholm = af.formatSequences(FileFormat.Stockholm,
             new Alignment(new SequenceI[]
             { sq }), false);
-    assertTrue(toStockholm.matches("AC\\s+P00224"),
+    System.out.println(toStockholm);
+    // bleh - java.util.Regex sucks
+    assertTrue(
+            Pattern.compile(".*\\s+AC\\s+P00224.*",
+                    java.util.regex.Pattern.DOTALL).matcher(toStockholm)
+                    .matches(),
             "Couldn't locate UNIPROT Accession in generated Stockholm file.");
     AlignmentI fromStockholm = af.readFile(toStockholm,
             DataSourceType.PASTE, FileFormat.Stockholm);