X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FTCoffeeScoreFileTest.java;h=493e9cd96166bfb67eafe19b0210cdfa494e6574;hb=a7f8fa9c06d82efbbdbc6a0bf1054bb21610b353;hp=85c0bff282a40cedc3014f3acb7b02c14dafd449;hpb=54b98888f691a29c2bdeedcfc120036e921e73d6;p=jalview.git

diff --git a/test/jalview/io/TCoffeeScoreFileTest.java b/test/jalview/io/TCoffeeScoreFileTest.java
index 85c0bff..493e9cd 100644
--- a/test/jalview/io/TCoffeeScoreFileTest.java
+++ b/test/jalview/io/TCoffeeScoreFileTest.java
@@ -12,7 +12,14 @@ import java.io.IOException;
 import java.io.StringReader;
 import java.util.List;
 
+import javax.xml.parsers.ParserConfigurationException;
+
 import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
+import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
+import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
 
 public class TCoffeeScoreFileTest {
 
@@ -20,7 +27,7 @@ public class TCoffeeScoreFileTest {
         final static File ALIGN_FILE = new File("test/jalview/io/tcoffee.fasta_aln");
 	
 	@Test
-	public void testReadHeader() throws IOException, FileNotFoundException {
+	public void testReadHeader() throws IOException, FileNotFoundException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {
 
 	        TCoffeeScoreFile scoreFile = new TCoffeeScoreFile(SCORE_FILE.getPath(),AppletFormatAdapter.FILE);
 	        assertTrue(scoreFile.getWarningMessage(),scoreFile.isValid());
@@ -41,7 +48,7 @@ public class TCoffeeScoreFileTest {
 	
 	
 	@Test
-	public void testWrongFile() {
+	public void testWrongFile() throws ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {
 	    try {
 		TCoffeeScoreFile result = new TCoffeeScoreFile(ALIGN_FILE.getPath(), FormatAdapter.FILE);
 		assertFalse(result.isValid());
@@ -52,7 +59,7 @@ public class TCoffeeScoreFileTest {
 	} 
 
 	@Test
-	public void testHeightAndWidth() throws IOException {
+	public void testHeightAndWidth() throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {
 		TCoffeeScoreFile result = new TCoffeeScoreFile(SCORE_FILE.getPath(), FormatAdapter.FILE);
 		assertTrue(result.isValid());
 		assertEquals( 8, result.getHeight() );
@@ -92,7 +99,7 @@ public class TCoffeeScoreFileTest {
 	}
 
 	@Test
-	public void testParse() throws IOException {
+	public void testParse() throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {
 
 		TCoffeeScoreFile parser = new TCoffeeScoreFile(SCORE_FILE.getPath(), FormatAdapter.FILE);
 
@@ -109,7 +116,7 @@ public class TCoffeeScoreFileTest {
 
 	
 	@Test
-	public void testGetAsList() throws IOException {
+	public void testGetAsList() throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {
 		
           TCoffeeScoreFile parser = new TCoffeeScoreFile(SCORE_FILE.getPath(),FormatAdapter.FILE);
           assertTrue(parser.getWarningMessage(),parser.isValid());
@@ -128,7 +135,7 @@ public class TCoffeeScoreFileTest {
 	
 	
 	@Test
-	public void testGetAsArray() throws IOException {
+	public void testGetAsArray() throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {
 		
           TCoffeeScoreFile parser = new TCoffeeScoreFile(SCORE_FILE.getPath(),FormatAdapter.FILE);
           assertTrue(parser.getWarningMessage(),parser.isValid());