X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2Fgff%2FGffHelperFactoryTest.java;h=f607cd159dd9d1b9d58daf0e4d5b8fc1322efafb;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=84725ff827b9206a28a2cde07ee0688a3d45adbd;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git

diff --git a/test/jalview/io/gff/GffHelperFactoryTest.java b/test/jalview/io/gff/GffHelperFactoryTest.java
index 84725ff..f607cd1 100644
--- a/test/jalview/io/gff/GffHelperFactoryTest.java
+++ b/test/jalview/io/gff/GffHelperFactoryTest.java
@@ -51,7 +51,8 @@ public class GffHelperFactoryTest
      */
     String gff = "submitted\taffine:local\tsimilarity\t20\t30\t99\t+\t.\t";
     // no attributes (column 9 data):
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof Gff2Helper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof Gff2Helper);
 
     // attributes set but unhandled featureGroup - get generic handler
     gff = "submitted\taffine:local\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
@@ -60,32 +61,40 @@ public class GffHelperFactoryTest
 
     // handled featureGroup (exonerate model) values
     gff = "submitted\texonerate:protein2dna:local\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     gff = "submitted\tprotein2genome\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     gff = "submitted\tcoding2coding\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     gff = "submitted\tcoding2genome\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     gff = "submitted\tcdna2genome\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     gff = "submitted\tgenome2genome\tsimilarity\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     // not case-sensitive:
     gff = "submitted\tgenome2genome\tSIMILARITY\t20\t30\t99\t+\t.\tID=$1";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof ExonerateHelper);
 
     /*
      * InterProScan has 'protein_match' in column 3
      */
     gff = "Submitted\tPANTHER\tprotein_match\t1\t1174\t0.0\t+\t.\tName=PTHR32154";
-    assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof InterProScanHelper);
+    assertTrue(GffHelperFactory
+            .getHelper(gff.split(tabRegex)) instanceof InterProScanHelper);
 
     /*
      * nothing specific - return the generic GFF3 class if Name=Value is present in col9