X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2Fvcf%2FtestVcf2.vcf;fp=test%2Fjalview%2Fio%2Fvcf%2FtestVcf2.vcf;h=aa3792a8367027be56b5ade4b664e6d5919c4266;hb=20a4d7ddb86ee996f2b6617a0470922b83354c35;hp=0000000000000000000000000000000000000000;hpb=5610d0f46a76d4269d25148d42f92d867fa1061a;p=jalview.git

diff --git a/test/jalview/io/vcf/testVcf2.vcf b/test/jalview/io/vcf/testVcf2.vcf
new file mode 100644
index 0000000..aa3792a
--- /dev/null
+++ b/test/jalview/io/vcf/testVcf2.vcf
@@ -0,0 +1,13 @@
+##fileformat=VCFv4.2
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##contig=<ID=contig123,length=15>
+##contig=<ID=contig456,length=20>
+##contig=<ID=contig789,length=25>
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##reference=test/jalview/io/vcf/contigs.fasta
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+contig123	8	.	C	A	81.96	.	AC=1;AF=0.1
+contig123	12	.	G	T	1666.64	.	AC=1;AF=0.2
+contig456	15	.	T	C	41.94	.	AC=1;AF=0.3
+contig789	2	.	G	T	224.23	.	AC=1,2;AF=0
+contig789	21	.	G	A	433.35	.	AC=3;AF=0.6