X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FBlosum62ColourSchemeTest.java;fp=test%2Fjalview%2Fschemes%2FBlosum62ColourSchemeTest.java;h=69bde42175d9e1b4abebf294f11224018b20837d;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=030a90f2a970da36a39910b730e0aef4c82543f9;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git diff --git a/test/jalview/schemes/Blosum62ColourSchemeTest.java b/test/jalview/schemes/Blosum62ColourSchemeTest.java index 030a90f..69bde42 100644 --- a/test/jalview/schemes/Blosum62ColourSchemeTest.java +++ b/test/jalview/schemes/Blosum62ColourSchemeTest.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.schemes; import static org.testng.Assert.assertEquals; @@ -14,7 +34,8 @@ public class Blosum62ColourSchemeTest *
  • white if there is no consensus
    • *
  • white if 'residue' is a gap
    • *
  • dark blue if residue matches consensus (or joint consensus)
    • - *
  • else, total the residue's Blosum score with the consensus residue(s)
    • + *
  • else, total the residue's Blosum score with the consensus + * residue(s)
    • *