X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fstructure%2FMapping.java;fp=test%2Fjalview%2Fstructure%2FMapping.java;h=db0ea49ecbe7fa3b5539fbe9ddc5ab6c509f98d3;hb=c9df5bd6e95c23c9b560c0a59003d1f4043f8055;hp=cc8138c1dacfe2cb3511b917a438ca1470ddcfb2;hpb=f59ae49cdd2bb8f6721424ea6ce167e8245e7d15;p=jalview.git diff --git a/test/jalview/structure/Mapping.java b/test/jalview/structure/Mapping.java index cc8138c..db0ea49 100644 --- a/test/jalview/structure/Mapping.java +++ b/test/jalview/structure/Mapping.java @@ -1,14 +1,7 @@ package jalview.structure; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertTrue; -import static org.junit.Assert.fail; - -import org.junit.Assert; -import org.junit.Ignore; -import org.junit.Test; - -import MCview.PDBfile; +import static org.testng.AssertJUnit.assertEquals; +import static org.testng.AssertJUnit.assertTrue; import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.Annotation; @@ -18,6 +11,12 @@ import jalview.gui.AlignFrame; import jalview.io.FileLoader; import jalview.io.FormatAdapter; +import org.testng.Assert; +import org.testng.AssertJUnit; +import org.testng.annotations.Test; + +import MCview.PDBfile; + public class Mapping { @@ -28,11 +27,10 @@ public class Mapping * 115 in PDB Res Numbering secondary structure numbers in jmol seem to be in * msd numbering, not pdb res numbering. */ - @Test - @Ignore + @Test(enabled = false) public void pdbEntryPositionMap() throws Exception { - fail("This test intentionally left to fail"); + Assert.fail("This test intentionally left to fail"); for (int offset = 0; offset < 20; offset += 6) { // check we put the secondary structure in the right position @@ -111,11 +109,10 @@ public class Mapping } } - @Test - @Ignore + @Test(enabled = false) public void testPDBentryMapping() throws Exception { - fail("This test intentionally left to fail"); + Assert.fail("This test intentionally left to fail"); Sequence sq = new Sequence( "1GAQ A subseq 126 to 219", "EIVKGVCSNFLCDLQPGDNVQITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLGWLFLGVPTSSSLLYKEEFGKM"); @@ -228,7 +225,7 @@ public class Mapping jalview.io.FormatAdapter.FILE); if (pmap == null) { - Assert.fail("Couldn't make a mapping for 3W5V to FER1_MAIZE"); + AssertJUnit.fail("Couldn't make a mapping for 3W5V to FER1_MAIZE"); } }