X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Futil%2FDBRefUtilsTest.java;h=d1c24d189231add9d327539066398267ff972909;hb=528c0f1815bc67b54618ad5b16c2162946974caf;hp=5e0683e106fa5f5c58c8df781c3d1f8bbe3d14a7;hpb=2cef2c13e720e889304333e70f893a23d1a98f42;p=jalview.git diff --git a/test/jalview/util/DBRefUtilsTest.java b/test/jalview/util/DBRefUtilsTest.java index 5e0683e..d1c24d1 100644 --- a/test/jalview/util/DBRefUtilsTest.java +++ b/test/jalview/util/DBRefUtilsTest.java @@ -197,8 +197,7 @@ public class DBRefUtilsTest 1 }, 1, 1))); List matches = DBRefUtils.searchRefs(new DBRefEntry[] { - ref1, - ref2, ref3, ref4, ref5 }, target); + ref1, ref2, ref3, ref4, ref5 }, target); assertEquals(3, matches.size()); assertSame(ref1, matches.get(0)); assertSame(ref2, matches.get(1)); @@ -231,8 +230,7 @@ public class DBRefUtilsTest ref3.setMap(map3); List matches = DBRefUtils.searchRefs(new DBRefEntry[] { - ref1, - ref2, ref3 }, target); + ref1, ref2, ref3 }, target); assertEquals(2, matches.size()); assertSame(ref1, matches.get(0)); assertSame(ref2, matches.get(1)); @@ -245,7 +243,7 @@ public class DBRefUtilsTest @Test(groups = { "Functional" }) public void testSearchRefs_accessionid() { - + DBRefEntry ref1 = new DBRefEntry("Uniprot", "1", "A1234"); // matches DBRefEntry ref2 = new DBRefEntry("embl", "1", "A1234"); // matches // constructor does not upper-case accession id @@ -255,9 +253,8 @@ public class DBRefUtilsTest DBRefEntry ref5 = new DBRefEntry("EMBL", "1", "A1234"); ref5.setMap(new Mapping(new MapList(new int[] { 1, 1 }, new int[] { 1, 1 }, 1, 1))); - - DBRefEntry[] dbrefs = new DBRefEntry[] { ref1, - ref2, ref3, ref4, ref5 }; + + DBRefEntry[] dbrefs = new DBRefEntry[] { ref1, ref2, ref3, ref4, ref5 }; List matches = DBRefUtils.searchRefs(dbrefs, "A1234"); assertEquals(3, matches.size()); assertSame(ref1, matches.get(0)); @@ -273,7 +270,7 @@ public class DBRefUtilsTest public void testSearchRefs_wildcardAccessionid() { DBRefEntry target = new DBRefEntry("EMBL", "2", null); - + DBRefEntry ref1 = new DBRefEntry("EMBL", "1", "A1234"); // matches // constructor changes embl to EMBL DBRefEntry ref2 = new DBRefEntry("embl", "1", "A1235"); // matches @@ -284,10 +281,9 @@ public class DBRefUtilsTest DBRefEntry ref5 = new DBRefEntry("EMBL", "1", "A1237"); ref5.setMap(new Mapping(new MapList(new int[] { 1, 1 }, new int[] { 1, 1 }, 1, 1))); - + List matches = DBRefUtils.searchRefs(new DBRefEntry[] { - ref1, - ref2, ref3, ref4, ref5 }, target); + ref1, ref2, ref3, ref4, ref5 }, target); assertEquals(4, matches.size()); assertSame(ref1, matches.get(0)); assertSame(ref2, matches.get(1));