X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Futil%2FUrlLinkTest.java;fp=test%2Fjalview%2Futil%2FUrlLinkTest.java;h=cea1bf2a973cd4b7b0d80eb7be2d63096e08e4f0;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=c7d37b097a20e805f9961857208633fc65ef691d;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git

diff --git a/test/jalview/util/UrlLinkTest.java b/test/jalview/util/UrlLinkTest.java
index c7d37b0..cea1bf2 100644
--- a/test/jalview/util/UrlLinkTest.java
+++ b/test/jalview/util/UrlLinkTest.java
@@ -62,7 +62,7 @@ public class UrlLinkTest
   final static String DELIM = "$";
 
   final static String REGEX_NESTED = "=/^(?:Label:)?(?:(?:gi\\|(\\d+))|([^:]+))/=";
-  
+
   final static String REGEX_RUBBISH = "=/[0-9]++/=";
 
   /**
@@ -155,11 +155,9 @@ public class UrlLinkTest
     assertEquals(REGEX_RUBBISH.substring(2, REGEX_RUBBISH.length() - 2),
             ul.getRegexReplace());
     assertFalse(ul.isValid());
-    assertEquals(
-            "Invalid Regular Expression : '"
-                    + REGEX_RUBBISH.substring(2, REGEX_RUBBISH.length() - 2)
-                    + "'\n",
-            ul.getInvalidMessage());
+    assertEquals("Invalid Regular Expression : '"
+            + REGEX_RUBBISH.substring(2, REGEX_RUBBISH.length() - 2)
+            + "'\n", ul.getInvalidMessage());
   }
 
   /**
@@ -316,8 +314,9 @@ public class UrlLinkTest
     List<DBRefEntry> refs = new ArrayList<>();
 
     // links as might be added into Preferences | Connections dialog
-    links.add("EMBL-EBI Search | http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$"
-            + SEQUENCE_ID + "$");
+    links.add(
+            "EMBL-EBI Search | http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$"
+                    + SEQUENCE_ID + "$");
     links.add("UNIPROT | http://www.uniprot.org/uniprot/$" + DB_ACCESSION
             + "$");
     links.add("INTERPRO | http://www.ebi.ac.uk/interpro/entry/$"
@@ -352,8 +351,8 @@ public class UrlLinkTest
     assertEquals(DB, linkset.get(key).get(0));
     assertEquals(DB, linkset.get(key).get(1));
     assertEquals(seq0.getName(), linkset.get(key).get(2));
-    assertEquals(URL_PREFIX + seq0.getName() + URL_SUFFIX, linkset.get(key)
-            .get(3));
+    assertEquals(URL_PREFIX + seq0.getName() + URL_SUFFIX,
+            linkset.get(key).get(3));
 
     // Test where link takes a db annotation id and only has one dbref
     ul = new UrlLink(links.get(1));
@@ -364,11 +363,11 @@ public class UrlLinkTest
     assertEquals(linkset.size(), 1);
     assertTrue(linkset.containsKey(key));
     assertEquals(DBRefSource.UNIPROT, linkset.get(key).get(0));
-    assertEquals(DBRefSource.UNIPROT + SEP + "P83527", linkset.get(key)
-            .get(1));
+    assertEquals(DBRefSource.UNIPROT + SEP + "P83527",
+            linkset.get(key).get(1));
     assertEquals("P83527", linkset.get(key).get(2));
-    assertEquals("http://www.uniprot.org/uniprot/P83527", linkset.get(key)
-            .get(3));
+    assertEquals("http://www.uniprot.org/uniprot/P83527",
+            linkset.get(key).get(3));
 
     // Test where link takes a db annotation id and has multiple dbrefs
     ul = new UrlLink(links.get(2));
@@ -382,24 +381,24 @@ public class UrlLinkTest
     assertEquals("INTERPRO", linkset.get(key).get(0));
     assertEquals("INTERPRO" + SEP + "IPR001041", linkset.get(key).get(1));
     assertEquals("IPR001041", linkset.get(key).get(2));
-    assertEquals("http://www.ebi.ac.uk/interpro/entry/IPR001041", linkset
-            .get(key).get(3));
+    assertEquals("http://www.ebi.ac.uk/interpro/entry/IPR001041",
+            linkset.get(key).get(3));
 
     key = "IPR006058|http://www.ebi.ac.uk/interpro/entry/IPR006058";
     assertTrue(linkset.containsKey(key));
     assertEquals("INTERPRO", linkset.get(key).get(0));
     assertEquals("INTERPRO" + SEP + "IPR006058", linkset.get(key).get(1));
     assertEquals("IPR006058", linkset.get(key).get(2));
-    assertEquals("http://www.ebi.ac.uk/interpro/entry/IPR006058", linkset
-            .get(key).get(3));
+    assertEquals("http://www.ebi.ac.uk/interpro/entry/IPR006058",
+            linkset.get(key).get(3));
 
     key = "IPR012675|http://www.ebi.ac.uk/interpro/entry/IPR012675";
     assertTrue(linkset.containsKey(key));
     assertEquals("INTERPRO", linkset.get(key).get(0));
     assertEquals("INTERPRO" + SEP + "IPR012675", linkset.get(key).get(1));
     assertEquals("IPR012675", linkset.get(key).get(2));
-    assertEquals("http://www.ebi.ac.uk/interpro/entry/IPR012675", linkset
-            .get(key).get(3));
+    assertEquals("http://www.ebi.ac.uk/interpro/entry/IPR012675",
+            linkset.get(key).get(3));
 
     // Test where there are no matching dbrefs for the link
     ul = new UrlLink(DB + SEP + URL_PREFIX + DELIM + DB_ACCESSION + DELIM