X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2FPDBSequenceFetcherTest.java;fp=test%2Fjalview%2Fws%2FPDBSequenceFetcherTest.java;h=adf53f53ac2a13da00ab3531b8110622f372b1aa;hb=f06554784411ddbf871d642e66c8dcb7f147d4a8;hp=2963ef20972ee4e28b7c12539b9e019ccb9e9286;hpb=cf06ee5d732af6cc874115aece1138adafca8ad7;p=jalview.git

diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java
index 2963ef2..adf53f5 100644
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -49,6 +49,14 @@ public class PDBSequenceFetcherTest
     sf = new SequenceFetcher(false);
   }
 
+  /**
+   * Test that RNA structure can be added by a call to the RNAML service.
+   * 
+   * Note this test depends on http://arn-ibmc.in2p3.fr/api/compute/2d which is
+   * not always reliable.
+   * 
+   * @throws Exception
+   */
   @Test(groups =
   { "Network" }, enabled = true)
   public void testRnaSeqRetrieve() throws Exception
@@ -61,8 +69,10 @@ public class PDBSequenceFetcherTest
     {
       assertTrue("No annotation transfered to sequence.",
               sq.getAnnotation().length > 0);
-      assertTrue("No PDBEntry on sequence.", sq.getPDBId().size() > 0);
-      assertTrue("No RNA annotation on sequence.", sq.getRNA() != null);
+      assertTrue("No PDBEntry on sequence.", sq.getAllPDBEntries().size() > 0);
+      assertTrue(
+              "No RNA annotation on sequence, possibly http://arn-ibmc.in2p3.fr/api/compute/2d not available?",
+              sq.getRNA() != null);
     }
   }