X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FJpredJabaStructExportImport.java;fp=test%2Fjalview%2Fws%2Fjabaws%2FJpredJabaStructExportImport.java;h=7afaeed8da7ae95a0e093b5547d680560b9cc593;hb=de75573aa38c4b40686256d4332c3a069b6a98ca;hp=c522bc39b69e17afab2ce7eab709219adfadf78d;hpb=a6c05e6488b5acb43d0ad3aeced88c2dcbe83a4c;p=jalview.git

diff --git a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
index c522bc3..7afaeed 100644
--- a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@ -215,7 +215,7 @@ public class JpredJabaStructExportImport
                       FormatAdapter.PASTE));
 
       // test for consistency in io
-      StockholmFileTest.testAlignmentEquivalence(al, al_new);
+      StockholmFileTest.testAlignmentEquivalence(al, al_new, false);
       return;
     } catch (Exception e)
     {