X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FJpredJabaStructExportImport.java;fp=test%2Fjalview%2Fws%2Fjabaws%2FJpredJabaStructExportImport.java;h=8326687d4e47813dd420ef962a9ec8462fd9a1e1;hb=49ae0c9823bb1c450e03460c5714a7db3cdf440b;hp=d5b6ed118f621d6324ee3e7e7948f72cd0bf2b08;hpb=7e7c422421698d7a47a9bad846c5522556f066d6;p=jalview.git

diff --git a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
index d5b6ed1..8326687 100644
--- a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@ -218,7 +218,8 @@ public class JpredJabaStructExportImport
                       DataSourceType.PASTE));
 
       // test for consistency in io
-      StockholmFileTest.testAlignmentEquivalence(al, al_new, false);
+      StockholmFileTest.testAlignmentEquivalence(al, al_new, false, false,
+              false);
       return;
     } catch (Exception e)
     {