X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FRNAStructExportImport.java;fp=test%2Fjalview%2Fws%2Fjabaws%2FRNAStructExportImport.java;h=665d9c8eeafa65dce9f365bd6eed4907881a9f43;hb=bbca0bbcacdbd8ff0a226ca516c099d05eaa5b53;hp=c1c335786143ab8e5186ef2ead6ea3dbcde79298;hpb=e7543a7264d0cd505a7344b704ce669726c44afc;p=jalview.git

diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java
index c1c3357..665d9c8 100644
--- a/test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/test/jalview/ws/jabaws/RNAStructExportImport.java
@@ -119,6 +119,38 @@ public class RNAStructExportImport
   }
 
   @Test
+  public void testRNAAliFoldValidStructure()
+  {
+
+    alifoldClient = new RNAalifoldClient(rnaalifoldws, af, null, null);
+
+    af.getViewport().getCalcManager().startWorker(alifoldClient);
+
+    do
+    {
+      try
+      {
+        Thread.sleep(50);
+      } catch (InterruptedException x)
+      {
+      }
+      ;
+    } while (af.getViewport().getCalcManager().isWorking());
+
+    AlignmentI orig_alig = af.getViewport().getAlignment();
+    for (AlignmentAnnotation aa:orig_alig.getAlignmentAnnotation())
+    {
+      if (alifoldClient.involves(aa))
+      {
+        if (aa.isRNA())
+        {
+          Assert.assertTrue("Did not create valid structure from RNAALiFold prediction", aa.isValidStruc());
+        }
+      }
+    }
+  }
+
+  @Test
   public void testRNAStructExport()
   {