X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fseqfetcher%2FDbRefFetcherTest.java;fp=test%2Fjalview%2Fws%2Fseqfetcher%2FDbRefFetcherTest.java;h=a7e5806607ff599ebb9135e95686554bd7e054d8;hb=ec8f3cedf60fb1feed6d34de6b49f6bfa78b9dd8;hp=de91af3eb3ad26733874801998bc7ed26de642d1;hpb=056dad85a910551cc95e44d451a61f6b8c4dd35d;p=jalview.git

diff --git a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index de91af3..a7e5806 100644
--- a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@ -181,25 +181,25 @@ public class DbRefFetcherTest
             FeatureProperties.isCodingFeature(embl.getDbSource(),
  sfs.get(0).getType()));
     assertEquals(embl.getDbSource(), sfs.get(0).getFeatureGroup());
-    DBRefEntry[] dr = DBRefUtils.selectRefs(seq.getDBRefs(),
+    List<DBRefEntry> dr = DBRefUtils.selectRefs(seq.getDBRefs(),
             new String[] { DBRefSource.UNIPROT });
     assertNotNull(dr);
-    assertEquals("Expected a single Uniprot cross reference", 1, dr.length);
-    assertEquals("Expected cross reference map to be one amino acid", dr[0]
+    assertEquals("Expected a single Uniprot cross reference", 1, dr.size());
+    assertEquals("Expected cross reference map to be one amino acid", dr.get(0)
             .getMap().getMappedWidth(), 1);
-    assertEquals("Expected local reference map to be 3 nucleotides", dr[0]
+    assertEquals("Expected local reference map to be 3 nucleotides", dr.get(0)
             .getMap().getWidth(), 3);
     AlignmentI sprods = new CrossRef(alsq.getSequencesArray(), alsq)
-            .findXrefSequences(dr[0].getSource(), true);
+            .findXrefSequences(dr.get(0).getSource(), true);
     assertNotNull(
             "Couldn't recover cross reference sequence from dataset. Was it ever added ?",
             sprods);
     assertEquals("Didn't xref right number of records", 1,
             sprods.getHeight());
     SequenceI proteinSeq = sprods.getSequenceAt(0);
-    assertEquals(proteinSeq.getSequenceAsString(), dr[0].getMap().getTo()
+    assertEquals(proteinSeq.getSequenceAsString(), dr.get(0).getMap().getTo()
             .getSequenceAsString());
-    assertEquals(dr[0].getSource() + "|" + dr[0].getAccessionId(),
+    assertEquals(dr.get(0).getSource() + "|" + dr.get(0).getAccessionId(),
             proteinSeq.getName());
   }
 }