X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=unused%2Fappletgui%2FFeatureColourChooser.java;h=70ba52d19e0655a5efaf06bfd04cc9249ee1e0db;hb=6319110ce33faa76ee6cf9832e78faa224510fed;hp=1a06490daa808f561f093fefa0d40761dfe3afd5;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44;p=jalviewjs.git
diff --git a/unused/appletgui/FeatureColourChooser.java b/unused/appletgui/FeatureColourChooser.java
index 1a06490..70ba52d 100644
--- a/unused/appletgui/FeatureColourChooser.java
+++ b/unused/appletgui/FeatureColourChooser.java
@@ -1,466 +1,466 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see .
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.appletgui;
-
-import jalview.datamodel.GraphLine;
-import jalview.schemes.AnnotationColourGradient;
-import jalview.schemes.GraduatedColor;
-import jalview.util.MessageManager;
-
-import javax.swing.JCheckBox;
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.FlowLayout;
-import java.awt.Font;
-import javax.swing.JFrame;
-import java.awt.GridLayout;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JScrollBar;
-import javax.swing.JTextField;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.AdjustmentEvent;
-import java.awt.event.AdjustmentListener;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-import java.util.Hashtable;
-
-public class FeatureColourChooser extends JPanel implements ActionListener,
- AdjustmentListener, ItemListener, MouseListener
-{
- JVDialog frame;
-
- JFrame owner;
-
- FeatureRenderer fr;
-
- FeatureSettings fs = null;
-
- // AlignmentPanel ap;
-
- GraduatedColor cs;
-
- Object oldcs;
-
- Hashtable oldgroupColours;
-
- boolean adjusting = false;
-
- private float min, max;
-
- String type = null;
-
- private AlignFrame af = null;
-
- public FeatureColourChooser(AlignFrame af, String type)
- {
- this.af = af;
- init(af.getSeqcanvas().getFeatureRenderer(), type);
- }
-
- public FeatureColourChooser(FeatureSettings fsettings, String type)
- {
- this.fs = fsettings;
- init(fsettings.fr, type);
- // this.ap = fsettings.ap;
- }
-
- private void init(FeatureRenderer frenderer, String type)
- {
- this.type = type;
- fr = frenderer;
- float mm[] = ((float[][]) fr.getMinMax().get(type))[0];
- min = mm[0];
- max = mm[1];
- oldcs = fr.getFeatureColours().get(type);
- if (oldcs instanceof GraduatedColor)
- {
- cs = new GraduatedColor((GraduatedColor) oldcs, min, max);
- }
- else
- {
- // promote original color to a graduated color
- Color bl = Color.black;
- if (oldcs instanceof Color)
- {
- bl = (Color) oldcs;
- }
- // original colour becomes the maximum colour
- cs = new GraduatedColor(Color.white, bl, mm[0], mm[1]);
- }
- minColour.setBackground(cs.getMinColor());
- maxColour.setBackground(cs.getMaxColor());
- minColour.setForeground(cs.getMinColor());
- maxColour.setForeground(cs.getMaxColor());
- colourFromLabel.setSelected(cs.isColourByLabel());
- adjusting = true;
-
- try
- {
- jbInit();
- } catch (Exception ex)
- {
- }
- threshold
- .select(cs.getThreshType() == AnnotationColourGradient.NO_THRESHOLD ? 0
- : cs.getThreshType() == AnnotationColourGradient.ABOVE_THRESHOLD ? 1
- : 2);
-
- adjusting = false;
- changeColour();
- colourFromLabel.addItemListener(this);
- slider.addAdjustmentListener(this);
- slider.addMouseListener(this);
- owner = (af != null) ? af : fs.frame;
- frame = new JVDialog(owner, MessageManager.formatMessage(
- "label.graduated_color_for_params", new String[]
- { type }), true, 480, 248);
- frame.setMainPanel(this);
- validate();
- frame.setVisible(true);
- if (frame.accept)
- {
- changeColour();
- }
- else
- {
- // cancel
- reset();
- PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
- frame.setVisible(false);
- }
- }
-
- public FeatureColourChooser()
- {
- try
- {
- jbInit();
- } catch (Exception ex)
- {
- ex.printStackTrace();
- }
- }
-
- private void jbInit() throws Exception
- {
- JLabel minLabel = new JLabel(MessageManager.getString("label.min")), maxLabel = new JLabel(
- MessageManager.getString("label.max"));
- minLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- maxLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- // minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- // minColour.setLabel("Min Colour");
-
- minColour.setBounds(0, 0, 40, 27);
- maxColour.setBounds(0, 0, 40, 27);
- minColour.addMouseListener(this);
-
- maxColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- maxColour.addMouseListener(this);
-
- thresholdIsMin.addItemListener(this);
-
- this.setLayout(new GridLayout(4, 1));
- jPanel1.setLayout(new FlowLayout());
- jPanel2.setLayout(new FlowLayout());
- jPanel3.setLayout(new GridLayout(1, 1));
- jPanel4.setLayout(new FlowLayout());
- jPanel1.setBackground(Color.white);
- jPanel2.setBackground(Color.white);
- jPanel4.setBackground(Color.white);
- threshold.addItemListener(this);
- threshold.addItem(MessageManager
- .getString("label.threshold_feature_no_thereshold"));
- threshold.addItem(MessageManager
- .getString("label.threshold_feature_above_thereshold"));
- threshold.addItem(MessageManager
- .getString("label.threshold_feature_below_thereshold"));
- thresholdValue.addActionListener(this);
- slider.setBackground(Color.white);
- slider.setEnabled(false);
- slider.setSize(new Dimension(93, 21));
- thresholdValue.setEnabled(false);
- thresholdValue.setSize(new Dimension(79, 22)); // setBounds(new
- // Rectangle(248, 2, 79,
- // 22));
- thresholdValue.setColumns(5);
- jPanel3.setBackground(Color.white);
-
- colourFromLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- colourFromLabel.setLabel(MessageManager
- .getString("label.colour_by_label"));
- colourFromLabel.setSize(new Dimension(139, 22));
- // threshold.setBounds(new Rectangle(11, 3, 139, 22));
- thresholdIsMin.setBackground(Color.white);
- thresholdIsMin.setLabel(MessageManager
- .getString("label.threshold_minmax"));
- thresholdIsMin.setSize(new Dimension(135, 23));
- // thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23));
- jPanel1.add(minLabel);
- jPanel1.add(minColour);
- jPanel1.add(maxLabel);
- jPanel1.add(maxColour);
- jPanel1.add(colourFromLabel);
- jPanel2.add(threshold);
- jPanel3.add(slider);
- jPanel4.add(thresholdValue);
- jPanel4.add(thresholdIsMin);
- this.add(jPanel1);// , java.awt.BorderLayout.NORTH);
- this.add(jPanel2);// , java.awt.BorderLayout.NORTH);
- this.add(jPanel3);// , java.awt.BorderLayout.CENTER);
- this.add(jPanel4);// , java.awt.BorderLayout.CENTER);
- }
-
- JPanel minColour = new JPanel();
-
- JPanel maxColour = new JPanel();
-
- JPanel jPanel1 = new JPanel();
-
- JPanel jPanel2 = new JPanel();
-
- Choice threshold = new Choice();
-
- JPanel jPanel3 = new JPanel();
-
- JPanel jPanel4 = new JPanel();
-
- JScrollBar slider = new JScrollBar(JScrollBar.HORIZONTAL);
-
- JTextField thresholdValue = new JTextField(20);
-
- // BorderLayout borderLayout1 = new BorderLayout();
-
- JCheckBox thresholdIsMin = new JCheckBox();
-
- JCheckBox colourFromLabel = new JCheckBox();
-
- private GraphLine threshline;
-
- public void actionPerformed(ActionEvent evt)
- {
- if (evt.getSource() == thresholdValue)
- {
- try
- {
- float f = new Float(thresholdValue.getText()).floatValue();
- slider.setValue((int) (f * 1000));
- adjustmentValueChanged(null);
- } catch (NumberFormatException ex)
- {
- }
- }
- else if (evt.getSource() == minColour)
- {
- minColour_actionPerformed(null);
- }
- else if (evt.getSource() == maxColour)
- {
- maxColour_actionPerformed(null);
- }
- else
- {
- changeColour();
- }
- }
-
- public void itemStateChanged(ItemEvent evt)
- {
- maxColour.setEnabled(!colourFromLabel.isSelected());
- minColour.setEnabled(!colourFromLabel.isSelected());
- changeColour();
- }
-
- public void adjustmentValueChanged(AdjustmentEvent evt)
- {
- if (!adjusting)
- {
- thresholdValue.setText((slider.getValue() / 1000f) + "");
- valueChanged();
- }
- }
-
- protected void valueChanged()
- {
- threshline.value = slider.getValue() / 1000f;
- cs.setThresh(threshline.value);
- changeColour();
- PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
- // ap.paintAlignment(false);
- }
-
- public void minColour_actionPerformed(Color newCol)
- {
- if (newCol == null)
- {
- UserDefinedColours udc = new UserDefinedColours(this,
- minColour.getBackground(), owner,
- MessageManager.getString("label.select_colour_minimum_value")); // frame.owner,
- }
- else
- {
- minColour.setBackground(newCol);
- minColour.setForeground(newCol);
- minColour.repaint();
- changeColour();
- }
-
- }
-
- public void maxColour_actionPerformed(Color newCol)
- {
- if (newCol == null)
- {
-
- // UserDefinedColours udc = new UserDefinedColours(this,
- // "Select Colour for Maximum Value",maxColour.getBackground(),true);
- UserDefinedColours udc = new UserDefinedColours(this,
- maxColour.getBackground(), owner,
- MessageManager.getString("label.select_colour_maximum_value"));
- }
- else
- {
- maxColour.setBackground(newCol);
- maxColour.setForeground(newCol);
- maxColour.repaint();
- changeColour();
- }
- }
-
- void changeColour()
- {
- // Check if combobox is still adjusting
- if (adjusting)
- {
- return;
- }
-
- int aboveThreshold = AnnotationColourGradient.NO_THRESHOLD;
- if (threshold.getSelectedIndex() == 1)
- {
- aboveThreshold = AnnotationColourGradient.ABOVE_THRESHOLD;
- }
- else if (threshold.getSelectedIndex() == 2)
- {
- aboveThreshold = AnnotationColourGradient.BELOW_THRESHOLD;
- }
-
- slider.setEnabled(true);
- thresholdValue.setEnabled(true);
- GraduatedColor acg = new GraduatedColor(minColour.getBackground(),
- maxColour.getBackground(), min, max);
-
- acg.setColourByLabel(colourFromLabel.isSelected());
- maxColour.setEnabled(!colourFromLabel.isSelected());
- minColour.setEnabled(!colourFromLabel.isSelected());
- if (aboveThreshold == AnnotationColourGradient.NO_THRESHOLD)
- {
- slider.setEnabled(false);
- thresholdValue.setEnabled(false);
- thresholdValue.setText("");
- }
-
- else if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD
- && threshline == null)
- {
- // todo visual indication of feature threshold
- threshline = new GraphLine((max - min) / 2f,
- "Threshold", Color.black);
- }
-
- if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD)
- {
- adjusting = true;
- acg.setThresh(threshline.value);
-
- float range = max * 1000f - min * 1000f;
-
- slider.setMinimum((int) (min * 1000));
- slider.setMaximum((int) (max * 1000));
- slider.setValue((int) (threshline.value * 1000));
- thresholdValue.setText(threshline.value + "");
- slider.setEnabled(true);
- thresholdValue.setEnabled(true);
- adjusting = false;
- }
-
- acg.setThreshType(aboveThreshold);
- if (thresholdIsMin.isSelected()
- && aboveThreshold != AnnotationColourGradient.NO_THRESHOLD)
- {
- if (aboveThreshold == AnnotationColourGradient.ABOVE_THRESHOLD)
- {
- acg = new GraduatedColor(acg, threshline.value, max);
- }
- else
- {
- acg = new GraduatedColor(acg, min, threshline.value);
- }
- }
-
- fr.setColour(type, acg);
- cs = acg;
- PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
- // ap.paintAlignment(false);
- }
-
- void reset()
- {
- fr.setColour(type, oldcs);
- PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
- // ap.paintAlignment(true);
-
- }
-
- public void mouseClicked(MouseEvent evt)
- {
- }
-
- public void mousePressed(MouseEvent evt)
- {
- }
-
- public void mouseReleased(MouseEvent evt)
- {
- if (evt.getSource() == minColour || evt.getSource() == maxColour)
- {
- // relay the event
- actionPerformed(new ActionEvent(evt.getSource(), 1, "Clicked"));
- }
- else
- {
- PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
- }
- // ap.paintAlignment(true);
- }
-
- public void mouseEntered(MouseEvent evt)
- {
- }
-
- public void mouseExited(MouseEvent evt)
- {
- }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.appletgui;
+
+import jalview.datamodel.GraphLine;
+import jalview.schemes.AnnotationColourGradient;
+import jalview.schemes.GraduatedColor;
+import jalview.util.MessageManager;
+
+import javax.swing.JCheckBox;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.FlowLayout;
+import java.awt.Font;
+import javax.swing.JFrame;
+import java.awt.GridLayout;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JScrollBar;
+import javax.swing.JTextField;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.AdjustmentEvent;
+import java.awt.event.AdjustmentListener;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.util.Hashtable;
+
+public class FeatureColourChooser extends JPanel implements ActionListener,
+ AdjustmentListener, ItemListener, MouseListener
+{
+ JVDialog frame;
+
+ JFrame owner;
+
+ FeatureRenderer fr;
+
+ FeatureSettings fs = null;
+
+ // AlignmentPanel ap;
+
+ GraduatedColor cs;
+
+ Object oldcs;
+
+ Hashtable oldgroupColours;
+
+ boolean adjusting = false;
+
+ private float min, max;
+
+ String type = null;
+
+ private AlignFrame af = null;
+
+ public FeatureColourChooser(AlignFrame af, String type)
+ {
+ this.af = af;
+ init(af.getSeqcanvas().getFeatureRenderer(), type);
+ }
+
+ public FeatureColourChooser(FeatureSettings fsettings, String type)
+ {
+ this.fs = fsettings;
+ init(fsettings.fr, type);
+ // this.ap = fsettings.ap;
+ }
+
+ private void init(FeatureRenderer frenderer, String type)
+ {
+ this.type = type;
+ fr = frenderer;
+ float mm[] = ((float[][]) fr.getMinMax().get(type))[0];
+ min = mm[0];
+ max = mm[1];
+ oldcs = fr.getFeatureColours().get(type);
+ if (oldcs instanceof GraduatedColor)
+ {
+ cs = new GraduatedColor((GraduatedColor) oldcs, min, max);
+ }
+ else
+ {
+ // promote original color to a graduated color
+ Color bl = Color.black;
+ if (oldcs instanceof Color)
+ {
+ bl = (Color) oldcs;
+ }
+ // original colour becomes the maximum colour
+ cs = new GraduatedColor(Color.white, bl, mm[0], mm[1]);
+ }
+ minColour.setBackground(cs.getMinColor());
+ maxColour.setBackground(cs.getMaxColor());
+ minColour.setForeground(cs.getMinColor());
+ maxColour.setForeground(cs.getMaxColor());
+ colourFromLabel.setSelected(cs.isColourByLabel());
+ adjusting = true;
+
+ try
+ {
+ jbInit();
+ } catch (Exception ex)
+ {
+ }
+ threshold
+ .select(cs.getThreshType() == AnnotationColourGradient.NO_THRESHOLD ? 0
+ : cs.getThreshType() == AnnotationColourGradient.ABOVE_THRESHOLD ? 1
+ : 2);
+
+ adjusting = false;
+ changeColour();
+ colourFromLabel.addItemListener(this);
+ slider.addAdjustmentListener(this);
+ slider.addMouseListener(this);
+ owner = (af != null) ? af : fs.frame;
+ frame = new JVDialog(owner, MessageManager.formatMessage(
+ "label.graduated_color_for_params", new String[]
+ { type }), true, 480, 248);
+ frame.setMainPanel(this);
+ validate();
+ frame.setVisible(true);
+ if (frame.accept)
+ {
+ changeColour();
+ }
+ else
+ {
+ // cancel
+ reset();
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
+ frame.setVisible(false);
+ }
+ }
+
+ public FeatureColourChooser()
+ {
+ try
+ {
+ jbInit();
+ } catch (Exception ex)
+ {
+ ex.printStackTrace();
+ }
+ }
+
+ private void jbInit() throws Exception
+ {
+ JLabel minLabel = new JLabel(MessageManager.getString("label.min")), maxLabel = new JLabel(
+ MessageManager.getString("label.max"));
+ minLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+ maxLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+ // minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+ // minColour.setLabel("Min Colour");
+
+ minColour.setBounds(0, 0, 40, 27);
+ maxColour.setBounds(0, 0, 40, 27);
+ minColour.addMouseListener(this);
+
+ maxColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+ maxColour.addMouseListener(this);
+
+ thresholdIsMin.addItemListener(this);
+
+ this.setLayout(new GridLayout(4, 1));
+ jPanel1.setLayout(new FlowLayout());
+ jPanel2.setLayout(new FlowLayout());
+ jPanel3.setLayout(new GridLayout(1, 1));
+ jPanel4.setLayout(new FlowLayout());
+ jPanel1.setBackground(Color.white);
+ jPanel2.setBackground(Color.white);
+ jPanel4.setBackground(Color.white);
+ threshold.addItemListener(this);
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_no_thereshold"));
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_above_thereshold"));
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_below_thereshold"));
+ thresholdValue.addActionListener(this);
+ slider.setBackground(Color.white);
+ slider.setEnabled(false);
+ slider.setSize(new Dimension(93, 21));
+ thresholdValue.setEnabled(false);
+ thresholdValue.setSize(new Dimension(79, 22)); // setBounds(new
+ // Rectangle(248, 2, 79,
+ // 22));
+ thresholdValue.setColumns(5);
+ jPanel3.setBackground(Color.white);
+
+ colourFromLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+ colourFromLabel.setLabel(MessageManager
+ .getString("label.colour_by_label"));
+ colourFromLabel.setSize(new Dimension(139, 22));
+ // threshold.setBounds(new Rectangle(11, 3, 139, 22));
+ thresholdIsMin.setBackground(Color.white);
+ thresholdIsMin.setLabel(MessageManager
+ .getString("label.threshold_minmax"));
+ thresholdIsMin.setSize(new Dimension(135, 23));
+ // thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23));
+ jPanel1.add(minLabel);
+ jPanel1.add(minColour);
+ jPanel1.add(maxLabel);
+ jPanel1.add(maxColour);
+ jPanel1.add(colourFromLabel);
+ jPanel2.add(threshold);
+ jPanel3.add(slider);
+ jPanel4.add(thresholdValue);
+ jPanel4.add(thresholdIsMin);
+ this.add(jPanel1);// , java.awt.BorderLayout.NORTH);
+ this.add(jPanel2);// , java.awt.BorderLayout.NORTH);
+ this.add(jPanel3);// , java.awt.BorderLayout.CENTER);
+ this.add(jPanel4);// , java.awt.BorderLayout.CENTER);
+ }
+
+ JPanel minColour = new JPanel();
+
+ JPanel maxColour = new JPanel();
+
+ JPanel jPanel1 = new JPanel();
+
+ JPanel jPanel2 = new JPanel();
+
+ Choice threshold = new Choice();
+
+ JPanel jPanel3 = new JPanel();
+
+ JPanel jPanel4 = new JPanel();
+
+ JScrollBar slider = new JScrollBar(JScrollBar.HORIZONTAL);
+
+ JTextField thresholdValue = new JTextField(20);
+
+ // BorderLayout borderLayout1 = new BorderLayout();
+
+ JCheckBox thresholdIsMin = new JCheckBox();
+
+ JCheckBox colourFromLabel = new JCheckBox();
+
+ private GraphLine threshline;
+
+ public void actionPerformed(ActionEvent evt)
+ {
+ if (evt.getSource() == thresholdValue)
+ {
+ try
+ {
+ float f = new Float(thresholdValue.getText()).floatValue();
+ slider.setValue((int) (f * 1000));
+ adjustmentValueChanged(null);
+ } catch (NumberFormatException ex)
+ {
+ }
+ }
+ else if (evt.getSource() == minColour)
+ {
+ minColour_actionPerformed(null);
+ }
+ else if (evt.getSource() == maxColour)
+ {
+ maxColour_actionPerformed(null);
+ }
+ else
+ {
+ changeColour();
+ }
+ }
+
+ public void itemStateChanged(ItemEvent evt)
+ {
+ maxColour.setEnabled(!colourFromLabel.isSelected());
+ minColour.setEnabled(!colourFromLabel.isSelected());
+ changeColour();
+ }
+
+ public void adjustmentValueChanged(AdjustmentEvent evt)
+ {
+ if (!adjusting)
+ {
+ thresholdValue.setText((slider.getValue() / 1000f) + "");
+ valueChanged();
+ }
+ }
+
+ protected void valueChanged()
+ {
+ threshline.value = slider.getValue() / 1000f;
+ cs.setThresh(threshline.value);
+ changeColour();
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
+ // ap.paintAlignment(false);
+ }
+
+ public void minColour_actionPerformed(Color newCol)
+ {
+ if (newCol == null)
+ {
+ UserDefinedColours udc = new UserDefinedColours(this,
+ minColour.getBackground(), owner,
+ MessageManager.getString("label.select_colour_minimum_value")); // frame.owner,
+ }
+ else
+ {
+ minColour.setBackground(newCol);
+ minColour.setForeground(newCol);
+ minColour.repaint();
+ changeColour();
+ }
+
+ }
+
+ public void maxColour_actionPerformed(Color newCol)
+ {
+ if (newCol == null)
+ {
+
+ // UserDefinedColours udc = new UserDefinedColours(this,
+ // "Select Colour for Maximum Value",maxColour.getBackground(),true);
+ UserDefinedColours udc = new UserDefinedColours(this,
+ maxColour.getBackground(), owner,
+ MessageManager.getString("label.select_colour_maximum_value"));
+ }
+ else
+ {
+ maxColour.setBackground(newCol);
+ maxColour.setForeground(newCol);
+ maxColour.repaint();
+ changeColour();
+ }
+ }
+
+ void changeColour()
+ {
+ // Check if combobox is still adjusting
+ if (adjusting)
+ {
+ return;
+ }
+
+ int aboveThreshold = AnnotationColourGradient.NO_THRESHOLD;
+ if (threshold.getSelectedIndex() == 1)
+ {
+ aboveThreshold = AnnotationColourGradient.ABOVE_THRESHOLD;
+ }
+ else if (threshold.getSelectedIndex() == 2)
+ {
+ aboveThreshold = AnnotationColourGradient.BELOW_THRESHOLD;
+ }
+
+ slider.setEnabled(true);
+ thresholdValue.setEnabled(true);
+ GraduatedColor acg = new GraduatedColor(minColour.getBackground(),
+ maxColour.getBackground(), min, max);
+
+ acg.setColourByLabel(colourFromLabel.isSelected());
+ maxColour.setEnabled(!colourFromLabel.isSelected());
+ minColour.setEnabled(!colourFromLabel.isSelected());
+ if (aboveThreshold == AnnotationColourGradient.NO_THRESHOLD)
+ {
+ slider.setEnabled(false);
+ thresholdValue.setEnabled(false);
+ thresholdValue.setText("");
+ }
+
+ else if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD
+ && threshline == null)
+ {
+ // todo visual indication of feature threshold
+ threshline = new GraphLine((max - min) / 2f,
+ "Threshold", Color.black);
+ }
+
+ if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD)
+ {
+ adjusting = true;
+ acg.setThresh(threshline.value);
+
+ float range = max * 1000f - min * 1000f;
+
+ slider.setMinimum((int) (min * 1000));
+ slider.setMaximum((int) (max * 1000));
+ slider.setValue((int) (threshline.value * 1000));
+ thresholdValue.setText(threshline.value + "");
+ slider.setEnabled(true);
+ thresholdValue.setEnabled(true);
+ adjusting = false;
+ }
+
+ acg.setThreshType(aboveThreshold);
+ if (thresholdIsMin.isSelected()
+ && aboveThreshold != AnnotationColourGradient.NO_THRESHOLD)
+ {
+ if (aboveThreshold == AnnotationColourGradient.ABOVE_THRESHOLD)
+ {
+ acg = new GraduatedColor(acg, threshline.value, max);
+ }
+ else
+ {
+ acg = new GraduatedColor(acg, min, threshline.value);
+ }
+ }
+
+ fr.setColour(type, acg);
+ cs = acg;
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
+ // ap.paintAlignment(false);
+ }
+
+ void reset()
+ {
+ fr.setColour(type, oldcs);
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
+ // ap.paintAlignment(true);
+
+ }
+
+ public void mouseClicked(MouseEvent evt)
+ {
+ }
+
+ public void mousePressed(MouseEvent evt)
+ {
+ }
+
+ public void mouseReleased(MouseEvent evt)
+ {
+ if (evt.getSource() == minColour || evt.getSource() == maxColour)
+ {
+ // relay the event
+ actionPerformed(new ActionEvent(evt.getSource(), 1, "Clicked"));
+ }
+ else
+ {
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
+ }
+ // ap.paintAlignment(true);
+ }
+
+ public void mouseEntered(MouseEvent evt)
+ {
+ }
+
+ public void mouseExited(MouseEvent evt)
+ {
+ }
+
+}