X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2FInstallAnywhere%2FJalview.iap_xml;h=31c1f03a594ecff70f251372b99a4690cd878bae;hb=71839c951c358509285e69ea0c30ab11bc4d180e;hp=45b342562ab3762945e1291dae183f0fda96e9a3;hpb=2681593fa6810815547b688b89424c837cac1240;p=jalview.git

diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 45b3425..31c1f03 100755
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -200,7 +200,7 @@ Can be separated by colons (Mac OS/Unix) or semicolons (Windows)]]></string>
 							<method name="addElement">
 								<object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97fa91cfa6f7">
 									<property name="propertyValue">
-										<string><![CDATA[268400000]]></string>
+										<string><![CDATA[1060000000]]></string>
 									</property>
 									<property name="propertyName">
 										<string><![CDATA[lax.nl.java.option.java.heap.size.max]]></string>
@@ -254,7 +254,7 @@ it will search for ones in this list]]></string>
 							<method name="addElement">
 								<object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97f991ffa6f7">
 									<property name="propertyValue">
-										<string><![CDATA[33554432]]></string>
+										<string><![CDATA[1000000000]]></string>
 									</property>
 									<property name="propertyName">
 										<string><![CDATA[lax.nl.java.option.java.heap.size.initial]]></string>
@@ -314,13 +314,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[logo.gif]]></string>
 							</property>
 							<property name="smallIconPath">
-								<string><![CDATA[/home/cruisecontrol/jalview/resources/images/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/resources/images/]]></string>
 							</property>
 							<property name="largeIconPath">
-								<string><![CDATA[/home/cruisecontrol/jalview/resources/images/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/resources/images/]]></string>
 							</property>
 							<property name="macOSXIconPath">
-								<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 							</property>
 							<property name="macOSXIconName">
 								<string><![CDATA[mac_logo.icns]]></string>
@@ -367,7 +367,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/dist/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/dist/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -419,7 +419,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -471,7 +471,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -523,7 +523,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -575,7 +575,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -627,7 +627,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -679,7 +679,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -731,7 +731,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -783,7 +783,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -835,7 +835,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -887,7 +887,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -939,7 +939,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -991,7 +991,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1043,7 +1043,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1095,7 +1095,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1147,7 +1147,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1199,7 +1199,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1251,7 +1251,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1280,58 +1280,6 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16838a449">
-							<property name="belongsToUninstallPhase">
-								<boolean>false</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-							<property name="unixPermissions">
-								<string><![CDATA[664]]></string>
-							</property>
-							<property name="sourceName">
-								<string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
-							</property>
-							<property name="overrideUnixPermissions">
-								<boolean>false</boolean>
-							</property>
-							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
-							</property>
-							<property name="shouldUninstall">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="destinationName">
-								<string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
-							</property>
-							<property name="fileSize">
-								<long>1035998</long>
-							</property>
-							<property name="macBinary">
-								<boolean>false</boolean>
-							</property>
-							<property name="targetCheckKind">
-								<int>0</int>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-						</object>
-					</method>
-					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16839a449">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -1355,7 +1303,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1407,7 +1355,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1453,13 +1401,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+								<string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1471,7 +1419,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+								<string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
 							</property>
 							<property name="fileSize">
 								<long>601804</long>
@@ -1511,7 +1459,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1563,7 +1511,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1615,7 +1563,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1667,7 +1615,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1719,7 +1667,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1771,7 +1719,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1823,7 +1771,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1875,7 +1823,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1904,110 +1852,6 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca391ab9f">
-							<property name="belongsToUninstallPhase">
-								<boolean>false</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-							<property name="unixPermissions">
-								<string><![CDATA[664]]></string>
-							</property>
-							<property name="sourceName">
-								<string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
-							</property>
-							<property name="overrideUnixPermissions">
-								<boolean>false</boolean>
-							</property>
-							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
-							</property>
-							<property name="shouldUninstall">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="destinationName">
-								<string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
-							</property>
-							<property name="fileSize">
-								<long>395587</long>
-							</property>
-							<property name="macBinary">
-								<boolean>false</boolean>
-							</property>
-							<property name="targetCheckKind">
-								<int>0</int>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-						</object>
-					</method>
-					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca392ab9f">
-							<property name="belongsToUninstallPhase">
-								<boolean>false</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-							<property name="unixPermissions">
-								<string><![CDATA[664]]></string>
-							</property>
-							<property name="sourceName">
-								<string><![CDATA[jdas-1.0.4.jar]]></string>
-							</property>
-							<property name="overrideUnixPermissions">
-								<boolean>false</boolean>
-							</property>
-							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
-							</property>
-							<property name="shouldUninstall">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="destinationName">
-								<string><![CDATA[jdas-1.0.4.jar]]></string>
-							</property>
-							<property name="fileSize">
-								<long>249906</long>
-							</property>
-							<property name="macBinary">
-								<boolean>false</boolean>
-							</property>
-							<property name="targetCheckKind">
-								<int>0</int>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-						</object>
-					</method>
-					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -2025,13 +1869,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[groovy-all-2.4.6-indy.jar]]></string>
+								<string><![CDATA[groovy-all-2.4.12-indy.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2043,7 +1887,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[groovy-all-2.4.6-indy.jar]]></string>
+								<string><![CDATA[groovy-all-2.4.12-indy.jar]]></string>
 							</property>
 							<property name="fileSize">
 								<long>6149494</long>
@@ -2060,58 +1904,6 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f46c2f42ab93">
-							<property name="belongsToUninstallPhase">
-								<boolean>false</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-							<property name="unixPermissions">
-								<string><![CDATA[664]]></string>
-							</property>
-							<property name="sourceName">
-								<string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
-							</property>
-							<property name="overrideUnixPermissions">
-								<boolean>false</boolean>
-							</property>
-							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
-							</property>
-							<property name="shouldUninstall">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledCancel">
-								<boolean>true</boolean>
-							</property>
-							<property name="rollbackEnabledError">
-								<boolean>true</boolean>
-							</property>
-							<property name="destinationName">
-								<string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
-							</property>
-							<property name="fileSize">
-								<long>382442</long>
-							</property>
-							<property name="macBinary">
-								<boolean>false</boolean>
-							</property>
-							<property name="targetCheckKind">
-								<int>0</int>
-							</property>
-							<property name="ruleExpression">
-								<string><![CDATA[]]></string>
-							</property>
-						</object>
-					</method>
-					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46cffffab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -2135,7 +1927,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2187,7 +1979,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2239,7 +2031,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2291,7 +2083,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2320,6 +2112,58 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
+            <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeef911a">
+              <property name="belongsToUninstallPhase">
+                <boolean>false</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+              <property name="unixPermissions">
+                <string><![CDATA[664]]></string>
+              </property>
+              <property name="sourceName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="overrideUnixPermissions">
+                <boolean>false</boolean>
+              </property>
+              <property name="sourcePath">
+                <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+              </property>
+              <property name="shouldUninstall">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="destinationName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="fileSize">
+                <long>1370564</long>
+              </property>
+              <property name="macBinary">
+                <boolean>false</boolean>
+              </property>
+              <property name="targetCheckKind">
+                <int>0</int>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+            </object>
+          </method>
+          <method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -2343,7 +2187,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2395,7 +2239,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2447,7 +2291,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2499,7 +2343,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2551,7 +2395,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2603,7 +2447,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2655,7 +2499,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2707,7 +2551,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2759,7 +2603,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2811,7 +2655,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2857,13 +2701,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[htsjdk-1.133.jar]]></string>
+								<string><![CDATA[htsjdk-2.12.0.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2875,7 +2719,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[htsjdk-1.133.jar]]></string>
+								<string><![CDATA[htsjdk-2.12.0.jar]]></string>
 							</property>
 							<property name="fileSize">
 								<long>16046</long>
@@ -2892,6 +2736,58 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfb93">
+							<property name="belongsToUninstallPhase">
+								<boolean>false</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+							<property name="unixPermissions">
+								<string><![CDATA[664]]></string>
+							</property>
+							<property name="sourceName">
+								<string><![CDATA[intervalstore-v0.4.jar]]></string>
+							</property>
+							<property name="overrideUnixPermissions">
+								<boolean>false</boolean>
+							</property>
+							<property name="sourcePath">
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+							</property>
+							<property name="shouldUninstall">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="destinationName">
+								<string><![CDATA[intervalstore-v0.4.jar]]></string>
+							</property>
+							<property name="fileSize">
+								<long>26303</long>
+							</property>
+							<property name="macBinary">
+								<boolean>false</boolean>
+							</property>
+							<property name="targetCheckKind">
+								<int>0</int>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+						</object>
+					</method>
+					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab939">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -2915,7 +2811,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2949,7 +2845,7 @@ and any path to a file to save to the file]]></string>
 				<string><![CDATA[The installer cannot run on your configuration. It will now quit.]]></string>
 			</property>
 			<property name="userSplashPath">
-				<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+				<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 			</property>
 			<property name="userSplashName">
 				<string><![CDATA[jalview.gif]]></string>
@@ -3846,7 +3742,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[OracleJRE8u5_Macosx.vm]]></string>
+												<string><![CDATA[OracleJRE180u92_macosx.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3883,7 +3779,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[SunJRE170_03Win32.vm]]></string>
+												<string><![CDATA[OracleJRE8u92_windows(x86).vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3954,10 +3850,10 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="buildWithVM">
-												<boolean>true</boolean>
+												<boolean>false</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[JRE16_16002HPUX11PA-RISC.vm]]></string>
+												<string><![CDATA[JRE16_16010HPUXPA-RISC.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3994,7 +3890,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
+												<string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -4102,7 +3998,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
+												<string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -4173,7 +4069,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[OracleJRE8u5_windows(x64).vm]]></string>
+												<string><![CDATA[OracleJRE180u92_windows(x64).vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -4242,7 +4138,7 @@ Press "Done" to quit the installer.]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="buildOutputLocation">
-								<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
 							</property>
 							<property name="relatedProjectSettings">
 								<object class="com.zerog.ia.installer.RelatedProjectSettings" objectID="97f2363da6ac">
@@ -5270,7 +5166,7 @@ Press "Done" to quit the installer.]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.installer.options.valid.vm.list]]></string>
-						<string><![CDATA[1.7+]]></string>
+						<string><![CDATA[1.8*]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
@@ -5366,7 +5262,7 @@ Press "Done" to quit the installer.]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.installer.options.platform.macosx.vm.version]]></string>
-						<string><![CDATA[1.7+]]></string>
+						<string><![CDATA[1.8*]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.build.platform.java.novm]]></string>
@@ -5406,7 +5302,7 @@ Press "Done" to quit the installer.]]></string>
 						<boolean>true</boolean>
 					</property>
 					<property name="backgroundImagePath">
-						<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+						<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 					</property>
 					<property name="backgroundImageName">
 						<string><![CDATA[align.gif]]></string>
@@ -7230,6 +7126,7 @@ and any path to a file to read from that file]]></string>
 										<object refID="24485f8ca673"/>
 										<object refID="24485f8ba674"/>
 										<object refID="24485f8ca674"/>
+										<object refID="9a1f46efeef911a"/>
 										<object class="com.zerog.ia.installer.actions.CreateShortcut" objectID="3cd8e2ffa672">
 											<property name="belongsToUninstallPhase">
 												<boolean>false</boolean>
@@ -7291,7 +7188,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7332,7 +7229,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7373,7 +7270,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/doc/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/doc/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7392,7 +7289,6 @@ and any path to a file to read from that file]]></string>
 											</property>
 										</object>
 										<object refID="88d4aff3b0c6"/>
-										<object refID="b1a16838a449"/>
 										<object refID="b1a16839a449"/>
 										<object refID="495aeddb8b3d"/>
 										<object refID="4996716cba8e"/>
@@ -7404,14 +7300,14 @@ and any path to a file to read from that file]]></string>
 										<object refID="aa3a5220b6bc"/>
 										<object refID="df3a5220b6bc"/>
 										<object refID="aa3a5220b6bc1"/>
-										<object refID="f44ca391ab9f"/>
-										<object refID="f44ca392ab9f"/>
+
 										<object refID="f44ca393ab9f"/>
-										<object refID="f46c2f42ab93"/>
+
 										<object refID="1f46cffffab93"/>
 										<object refID="1f46efeefab93"/>
 										<object refID="1936efeefab93"/>
 										<object refID="1000ddddfab93"/>
+										<object refID="1000ddddfb93"/>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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@@ -7486,7 +7382,7 @@ and any path to a file to read from that file]]></string>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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@@ -7527,7 +7423,7 @@ and any path to a file to read from that file]]></string>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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@@ -7568,7 +7464,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
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 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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@@ -7823,7 +7719,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
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 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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 												<boolean>true</boolean>
@@ -7864,7 +7760,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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@@ -7905,7 +7801,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
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@@ -7946,7 +7842,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/lib]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/lib]]></string>
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 												<boolean>true</boolean>
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 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/groovy]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/groovy]]></string>
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 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -8077,7 +7974,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples]]></string>
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@@ -8133,7 +8030,7 @@ and any path to a file to read from that file]]></string>
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 											<property name="sourcePath">
-												<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
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 												<boolean>true</boolean>
@@ -8174,7 +8071,7 @@ and any path to a file to read from that file]]></string>
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 											<property name="sourcePath">
-												<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
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 												<boolean>true</boolean>
@@ -8359,7 +8256,7 @@ and any path to a file to read from that file]]></string>
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 									<property name="imagePath">
-										<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+										<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
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 									<property name="imageName">
 										<string><![CDATA[bartonGroup.gif]]></string>