X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Fgetdown%2Fbin%2Fjalview.sh;h=07fd6edd6edafeb1652a66a040694a42e7090996;hb=5c1e4c64f0b6befefca853ebb198ddc3bcc253a4;hp=c1ad597874788156386dd23e1d1c34dbfc5420e7;hpb=5e462885d21193706d23e42cd5e21e88763788cb;p=jalview.git

diff --git a/utils/getdown/bin/jalview.sh b/utils/getdown/bin/jalview.sh
index c1ad597..07fd6ed 100755
--- a/utils/getdown/bin/jalview.sh
+++ b/utils/getdown/bin/jalview.sh
@@ -38,9 +38,12 @@ fi
 
 # check for headless mode
 HEADLESS=0
-for ARG in ARGS; do
+for ARG in "${@}"; do
   if [ "${ARG}" = "--headless" ]; then
     HEADLESS=1
+  elif [ "${ARG}" = "--gui" ]; then
+    # --gui takes precedence over --headless
+    HEADLESS=0
     break
   fi
 done