X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Finstall4j%2Finstall4j_template.install4j;fp=utils%2Finstall4j%2Finstall4j_template.install4j;h=2f65f51ca14d1302e3da152a866dc7571767975b;hb=b419d3b17606d478c234678487ff34d97bfa83cc;hp=7a924e2cd72b31a704e5377015d821fc2eac4100;hpb=b0716c75367a82443cd516ef3ea08708dacd92e9;p=jalview.git

diff --git a/utils/install4j/install4j_template.install4j b/utils/install4j/install4j_template.install4j
index 7a924e2..2f65f51 100644
--- a/utils/install4j/install4j_template.install4j
+++ b/utils/install4j/install4j_template.install4j
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <install4j version="7.0.9" transformSequenceNumber="7">
-  <directoryPresets config="../../../../../buildtools/jre/openjdk-java_vm/macos-jdk8u202-b08-jre" />
+  <directoryPresets config="." />
   <application name="Jalview" distributionSourceDir="" applicationId="6595-2347-1923-0725" mediaDir="../../build/install4j" mediaFilePattern="${compiler:sys.shortName}_${compiler:sys.platform}_${compiler:sys.version}" compression="6" lzmaCompression="true" pack200Compression="false" excludeSignedFromPacking="true" commonExternalFiles="false" createMd5Sums="true" shrinkRuntime="true" shortName="Jalview" publisher="University of Dundee" publisherWeb="http://www.jalview.org/" version="$$VERSION$$" allPathsRelative="true" backupOnSave="false" autoSave="false" convertDotsToUnderscores="true" macSignature="????" macVolumeId="5aac4968c304f65" javaMinVersion="9999999999" javaMaxVersion="" allowBetaVM="true" jdkMode="jdk" jdkName="JDK 11.0">
     <languages skipLanguageSelection="false" languageSelectionInPrincipalLanguage="false">
       <principalLanguage id="en" customLocalizationFile="" />
@@ -8,6 +8,8 @@
     </languages>
     <searchSequence>
       <directory location="${compiler:JRE_DIR}" />
+      <registry />
+      <envVar name="JAVA_HOME" />
     </searchSequence>
     <variables>
       <variable name="OSX_KEYSTORE" value="" description="" category="" />
@@ -25,17 +27,23 @@
       <fileset name="Full file set" id="734" customizedId="" />
       <fileset name="Mac OS X JRE" id="880" customizedId="" />
       <fileset name="Windows JRE" id="882" customizedId="" />
+      <fileset name="Jalview application" id="1873" customizedId="" />
+      <fileset name="MacOS Old Jalview Uninstaller" id="2105" customizedId="" />
     </filesets>
     <roots>
       <root id="735" fileset="734" location="" />
       <root id="881" fileset="880" location="" />
       <root id="883" fileset="882" location="" />
+      <root id="1874" fileset="1873" location="" />
+      <root id="2106" fileset="2105" location="" />
     </roots>
     <mountPoints>
       <mountPoint id="454" root="" location="" mode="755" />
       <mountPoint id="736" root="735" location="" mode="755" />
       <mountPoint id="884" root="881" location="" mode="755" />
       <mountPoint id="885" root="883" location="" mode="755" />
+      <mountPoint id="1875" root="1874" location="" mode="755" />
+      <mountPoint id="2107" root="2106" location="" mode="755" />
     </mountPoints>
     <entries>
       <dirEntry mountPoint="454" file="../../getdown/files/$$JAVA_VERSION$$" overwriteMode="4" shared="false" fileMode="644" uninstallMode="2" overrideFileMode="false" overrideOverwriteMode="true" overrideUninstallMode="true" entryMode="direct" subDirectory="files" excludeSuffixes="" dirMode="755" overrideDirMode="false">
@@ -50,6 +58,12 @@
       <dirEntry mountPoint="885" file="$$WINDOWS_JAVA_VM_DIR$$" overwriteMode="4" shared="false" fileMode="755" uninstallMode="0" overrideFileMode="true" overrideOverwriteMode="false" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" excludeSuffixes="" dirMode="755" overrideDirMode="false">
         <exclude />
       </dirEntry>
+      <dirEntry mountPoint="1875" file="../../getdown/website/$$JAVA_VERSION$$/dist" overwriteMode="1" shared="false" fileMode="644" uninstallMode="2" overrideFileMode="true" overrideOverwriteMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="dist" excludeSuffixes="" dirMode="755" overrideDirMode="true">
+        <exclude />
+      </dirEntry>
+      <dirEntry mountPoint="2107" file="Uninstall Old Jalview.app" overwriteMode="4" shared="false" fileMode="755" uninstallMode="0" overrideFileMode="true" overrideOverwriteMode="false" overrideUninstallMode="false" entryMode="subdir" subDirectory="Uninstall Old Jalview.app" excludeSuffixes="" dirMode="755" overrideDirMode="true">
+        <exclude />
+      </dirEntry>
     </entries>
     <components>
       <component name="jalview_getdown" id="1031" customizedId="" displayDescription="false" hideHelpButton="false" selected="true" changeable="true" downloadable="false" hidden="false">
@@ -80,6 +94,20 @@
         </include>
         <dependencies />
       </component>
+      <component name="jalview" id="1881" customizedId="" displayDescription="false" hideHelpButton="false" selected="true" changeable="true" downloadable="false" hidden="false">
+        <description />
+        <include all="false">
+          <entry location=".i4j_fileset_1873" fileType="regular" />
+        </include>
+        <dependencies />
+      </component>
+      <component name="macos_old_jalview_uninstaller" id="2110" customizedId="" displayDescription="false" hideHelpButton="false" selected="true" changeable="true" downloadable="false" hidden="false">
+        <description />
+        <include all="false">
+          <entry location=".i4j_fileset_2105" fileType="regular" />
+        </include>
+        <dependencies />
+      </component>
     </components>
   </files>
   <launchers>
@@ -149,6 +177,39 @@
         <file path="../../resources/images/JalviewLogo_Huge.png" />
       </iconImageFiles>
     </launcher>
+    <launcher name="Jalview package" id="1876" customizedId="" external="false" excludeFromMenu="false" unixMode="755" unixAutoStart="true" menuName="${compiler:sys.shortName} $$VERSION$$" icnsFile="" customMacBundleIdentifier="false" macBundleIdentifier="" swtApp="false" fileset="1873" macBundleBinary="JavaApplicationStub" addMacEntitlements="false" macEntitlementsFile="" useCustomMacosExecutableName="false" customMacosExecutableName="" useJavaMinVersionOverride="false" javaMinVersionOverride="" useJavaMaxVersionOverride="false" javaMaxVersionOverride="" checkUpdater="false" updateExecutionMode="unattendedProgress" unattendedUpdateTitle="${i18n:updater.WindowTitle(&quot;${compiler:sys.fullName}&quot;)}">
+      <executable name="${compiler:sys.shortName}" type="1" iconSet="true" iconFile="" executableDir="" redirectStderr="false" stderrFile="error.log" stderrMode="overwrite" redirectStdout="false" stdoutFile="output.log" stdoutMode="overwrite" failOnStderrOutput="false" executableMode="1" changeWorkingDirectory="false" workingDirectory="." singleInstance="true" serviceStartType="2" serviceDependencies="" serviceDescription="" jreLocation="" executionLevel="asInvoker" checkConsoleParameter="false" globalSingleInstance="false" singleInstanceActivate="true" dpiAware="java9+">
+        <versionInfo include="false" fileVersion="" fileDescription="" legalCopyright="" internalName="" productName="" />
+      </executable>
+      <splashScreen show="false" width="0" height="0" bitmapFile="" textOverlay="false">
+        <text>
+          <statusLine x="20" y="20" text="" fontSize="8" fontColor="0,0,0" bold="false" />
+          <versionLine x="20" y="40" text="version ${compiler:sys.version}" fontSize="8" fontColor="0,0,0" bold="false" />
+        </text>
+      </splashScreen>
+      <java mainClass="jalview.bin.Launcher" mainMode="1" vmParameters="" arguments="" allowVMPassthroughParameters="true" preferredVM="" bundleRuntime="true">
+        <classPath>
+          <scanDirectory location="dist" failOnError="false" />
+        </classPath>
+        <modulePath />
+        <nativeLibraryDirectories />
+        <vmOptions />
+      </java>
+      <includedFiles />
+      <unextractableFiles />
+      <vmOptionsFile mode="template" overwriteMode="0" fileMode="644">
+        <content />
+      </vmOptionsFile>
+      <customScript mode="1" file="">
+        <content />
+      </customScript>
+      <infoPlist mode="1" file="">
+        <content />
+      </infoPlist>
+      <iconImageFiles>
+        <file path="../../resources/images/JalviewLogo_Huge.png" />
+      </iconImageFiles>
+    </launcher>
   </launchers>
   <installerGui installerType="1" addOnAppId="" suggestPreviousLocations="true" autoUpdateDescriptorUrl="https://www.jalview.org/install4j/updates.xml" useAutoUpdateBaseUrl="false" autoUpdateBaseUrl="">
     <staticMembers script="" />
@@ -700,6 +761,36 @@ return console.askOkCancel(message, true);
             <preActivation />
             <postActivation />
             <actions>
+              <action name="" id="2012" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateStartMenuEntryAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateStartMenuEntryAction">
+                      <void property="allUsers">
+                        <boolean>false</boolean>
+                      </void>
+                      <void property="entryName">
+                        <string>${compiler:sys.shortName}</string>
+                      </void>
+                      <void property="file">
+                        <object class="java.io.File">
+                          <string>${compiler:sys.shortName}</string>
+                        </object>
+                      </void>
+                      <void property="icon">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>../../resources/images/jalview_logos.ico</string>
+                        </object>
+                      </void>
+                      <void property="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>../../resources/images/JalviewLogo_Huge.png</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition>!context.getBooleanVariable("sys.programGroupDisabled")</condition>
+              </action>
               <action name="" id="573" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateDesktopLinkAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make desktop link">
                 <serializedBean>
                   <java class="java.beans.XMLDecoder">
@@ -1666,20 +1757,24 @@ return console.askYesNo(message, true);
     </styles>
   </installerGui>
   <mediaSets>
-    <linuxDeb name="Linux Deb Archive" id="153" customizedId="" mediaFileName="" installDir="/opt/${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" overwriteNeverAsConfigFiles="false" dependencies="" bzip="true" description="Jalview Desktop" maintainerEmail="help@jalview.org" architectureSet="false" architecture="">
+    <linuxDeb name="Jalview .deb Package" id="153" customizedId="" mediaFileName="jalview-$$VERSION$$" installDir="/opt/${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" overwriteNeverAsConfigFiles="false" dependencies="openjdk-8-jre" bzip="true" description="Jalview Desktop" maintainerEmail="help@jalview.org" architectureSet="false" architecture="">
       <excludedComponents>
+        <component id="1031" />
         <component id="1155" />
         <component id="1156" />
         <component id="1276" />
+        <component id="2110" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedLaunchers>
+        <launcher id="737" />
         <launcher id="1402" />
       </excludedLaunchers>
       <excludedBeans />
       <overriddenPrincipalLanguage id="en" customLocalizationFile="" />
       <exclude>
         <entry location=".i4j_fileset_" fileType="regular" />
+        <entry location=".i4j_fileset_734" fileType="regular" />
         <entry location=".i4j_fileset_880" fileType="regular" />
         <entry location=".i4j_fileset_882" fileType="regular" />
       </exclude>
@@ -1701,20 +1796,24 @@ return console.askYesNo(message, true);
         <content />
       </postUninstallScript>
     </linuxDeb>
-    <linuxRPM name="Linux RPM" id="570" customizedId="" mediaFileName="" installDir="/opt/${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" overwriteNeverAsConfigFiles="false" dependencies="" os="linux" arch="i386">
+    <linuxRPM name="Jalview RPM Package" id="570" customizedId="" mediaFileName="jalview-$$VERSION$$" installDir="/opt/${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" overwriteNeverAsConfigFiles="false" dependencies="java-1.8.0-openjdk" os="linux" arch="noarch">
       <excludedComponents>
+        <component id="1031" />
         <component id="1155" />
         <component id="1156" />
         <component id="1276" />
+        <component id="2110" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedLaunchers>
+        <launcher id="737" />
         <launcher id="1402" />
       </excludedLaunchers>
       <excludedBeans />
       <overriddenPrincipalLanguage id="en" customLocalizationFile="" />
       <exclude>
         <entry location=".i4j_fileset_" fileType="regular" />
+        <entry location=".i4j_fileset_734" fileType="regular" />
         <entry location=".i4j_fileset_880" fileType="regular" />
         <entry location=".i4j_fileset_882" fileType="regular" />
       </exclude>
@@ -1736,11 +1835,13 @@ return console.askYesNo(message, true);
         <content />
       </postUninstallScript>
     </linuxRPM>
-    <windows name="Offline Windows" id="743" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="64" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="$$WINDOWS_JAVA_VM_TGZ$$" manualJREEntry="true" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="~/AppData/Local" contentFilesType="1" verifyIntegrity="true">
+    <windows name="Offline Windows x64 Installer" id="743" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="64" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="$$WINDOWS_JAVA_VM_TGZ$$" manualJREEntry="true" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="~/AppData/Local" contentFilesType="1" verifyIntegrity="true">
       <excludedComponents>
         <component id="1155" />
         <component id="1156" />
         <component id="1276" />
+        <component id="1881" />
+        <component id="2110" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedLaunchers>
@@ -1751,6 +1852,31 @@ return console.askYesNo(message, true);
       <exclude>
         <entry location=".i4j_fileset_" fileType="regular" />
         <entry location=".i4j_fileset_880" fileType="regular" />
+        <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
+      </exclude>
+      <variables />
+      <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
+        <commentFiles />
+        <customAttributes />
+      </autoUpdate>
+    </windows>
+    <windows name="Network Windows x64 Installer" id="1862" customizedId="" mediaFileName="${compiler:sys.shortName}-NETWORK_${compiler:sys.platform}_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="64" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="$$WINDOWS_JAVA_VM_TGZ$$" manualJREEntry="true" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="~/AppData/Local" contentFilesType="1" verifyIntegrity="true">
+      <excludedComponents>
+        <component id="1031" />
+        <component id="1155" />
+        <component id="1156" />
+        <component id="1881" />
+        <component id="2110" />
+      </excludedComponents>
+      <includedDownloadableComponents />
+      <excludedLaunchers />
+      <excludedBeans />
+      <overriddenPrincipalLanguage id="en" customLocalizationFile="" />
+      <exclude>
+        <entry location=".i4j_fileset_734" fileType="regular" />
+        <entry location=".i4j_fileset_880" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
       </exclude>
       <variables />
       <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
@@ -1758,10 +1884,11 @@ return console.askYesNo(message, true);
         <customAttributes />
       </autoUpdate>
     </windows>
-    <macosArchive name="Offline macOS Single Bundle Archive" id="878" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}-app_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" archiveType="dmg" volumeName="${compiler:sys.shortName} Installer" launcherId="737">
+    <macosArchive name="Offline macOS Disk Image" id="878" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}-app_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" archiveType="dmg" volumeName="${compiler:sys.shortName} Installer" launcherId="737">
       <excludedComponents>
         <component id="1156" />
         <component id="1276" />
+        <component id="1881" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedBeans />
@@ -1769,6 +1896,7 @@ return console.askYesNo(message, true);
       <exclude>
         <entry location=".i4j_fileset_" fileType="regular" />
         <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
       </exclude>
       <variables />
       <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
@@ -1782,12 +1910,14 @@ return console.askYesNo(message, true);
         <symlink name="Jalview.app/Contents/Resources/app/${compiler:JRE_DIR}/Contents/MacOS/libjli.dylib" target="../Home/lib/jli/libjli.dylib" />
         <file name="Jalview.app/Contents/Resources/Jalview-File.icns" file="./Jalview-File.icns" />
         <file name="Jalview.app/Contents/Resources/Jalview-Version-Locator.icns" file="Jalview-Version-Locator.icns" />
+        <symlink name="Uninstall Old Jalview.app" target="Jalview.app/Contents/Resources/app/Uninstall Old Jalview.app" />
       </topLevelFiles>
     </macosArchive>
-    <macosArchive name="Network macOS Single Bundle Archive" id="1274" customizedId="" mediaFileName="${compiler:sys.shortName}-NETWORK_${compiler:sys.platform}-app_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" archiveType="dmg" volumeName="${compiler:sys.shortName} Installer" launcherId="1402">
+    <macosArchive name="Network macOS Disk Image" id="1274" customizedId="" mediaFileName="${compiler:sys.shortName}-NETWORK_${compiler:sys.platform}-app_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false" archiveType="dmg" volumeName="${compiler:sys.shortName} Installer" launcherId="1402">
       <excludedComponents>
         <component id="1031" />
         <component id="1156" />
+        <component id="1881" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedBeans />
@@ -1795,6 +1925,7 @@ return console.askYesNo(message, true);
       <exclude>
         <entry location=".i4j_fileset_734" fileType="regular" />
         <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
       </exclude>
       <variables />
       <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
@@ -1808,10 +1939,17 @@ return console.askYesNo(message, true);
         <symlink name="Jalview.app/Contents/Resources/app/${compiler:JRE_DIR}/Contents/MacOS/libjli.dylib" target="../Home/lib/jli/libjli.dylib" />
         <file name="Jalview.app/Contents/Resources/Jalview-Version-Locator.icns" file="Jalview-Version-Locator.icns" />
         <file name="Jalview.app/Contents/Resources/Jalview-File.icns" file="Jalview-File.icns" />
+        <symlink name="Uninstall Old Jalview.app" target="Jalview.app/Contents/Resources/app/Uninstall Old Jalview.app" />
       </topLevelFiles>
     </macosArchive>
-    <unixInstaller name="Unix Installer" id="1595" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}_installer_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="" manualJREEntry="false" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="" contentFilesType="1">
-      <excludedComponents />
+    <unixInstaller name="Offline Unix Shell Installer" id="1595" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}_installer_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="" manualJREEntry="false" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="~/opt/" contentFilesType="1">
+      <excludedComponents>
+        <component id="1155" />
+        <component id="1156" />
+        <component id="1276" />
+        <component id="1881" />
+        <component id="2110" />
+      </excludedComponents>
       <includedDownloadableComponents />
       <excludedLaunchers>
         <launcher id="1402" />
@@ -1819,9 +1957,10 @@ return console.askYesNo(message, true);
       <excludedBeans />
       <overriddenPrincipalLanguage id="en" customLocalizationFile="" />
       <exclude>
-        <entry location=".i4j_fileset_734" fileType="regular" />
+        <entry location=".i4j_fileset_" fileType="regular" />
         <entry location=".i4j_fileset_880" fileType="regular" />
         <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
       </exclude>
       <variables />
       <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
@@ -1832,11 +1971,40 @@ return console.askYesNo(message, true);
         <content />
       </installerScript>
     </unixInstaller>
-    <unixArchive name="Unix Archive" id="1596" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}_archive_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false">
+    <unixInstaller name="Network Unix Shell Installer" id="1867" customizedId="" mediaFileName="${compiler:sys.shortName}-NETWORK_${compiler:sys.platform}_installer_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="" manualJREEntry="false" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="~/opt/" contentFilesType="1">
       <excludedComponents>
         <component id="1031" />
         <component id="1155" />
         <component id="1156" />
+        <component id="1881" />
+        <component id="2110" />
+      </excludedComponents>
+      <includedDownloadableComponents />
+      <excludedLaunchers />
+      <excludedBeans />
+      <overriddenPrincipalLanguage id="en" customLocalizationFile="" />
+      <exclude>
+        <entry location=".i4j_fileset_734" fileType="regular" />
+        <entry location=".i4j_fileset_880" fileType="regular" />
+        <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
+      </exclude>
+      <variables />
+      <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
+        <commentFiles />
+        <customAttributes />
+      </autoUpdate>
+      <installerScript mode="1" file="">
+        <content />
+      </installerScript>
+    </unixInstaller>
+    <unixArchive name="Offline Unix .tar.gz Archive" id="1596" customizedId="" mediaFileName="${compiler:sys.shortName}-OFFLINE_${compiler:sys.platform}_archive_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false">
+      <excludedComponents>
+        <component id="1155" />
+        <component id="1156" />
+        <component id="1276" />
+        <component id="1881" />
+        <component id="2110" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedLaunchers>
@@ -1844,18 +2012,25 @@ return console.askYesNo(message, true);
       </excludedLaunchers>
       <excludedBeans />
       <overriddenPrincipalLanguage id="en" customLocalizationFile="" />
-      <exclude />
+      <exclude>
+        <entry location=".i4j_fileset_" fileType="regular" />
+        <entry location=".i4j_fileset_880" fileType="regular" />
+        <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
+      </exclude>
       <variables />
       <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
         <commentFiles />
         <customAttributes />
       </autoUpdate>
     </unixArchive>
-    <windows name="Network Windows" id="1862" customizedId="" mediaFileName="${compiler:sys.shortName}-NETWORK_${compiler:sys.platform}_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="64" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="false" includedJRE="$$WINDOWS_JAVA_VM_TGZ$$" manualJREEntry="true" bundleType="1" jreURL="" jreShared="false" directDownload="false" installOnlyIfNecessary="false" customInstallBaseDir="~/AppData/Local" contentFilesType="1" verifyIntegrity="true">
+    <unixArchive name="Network Unix .tar.gz Archive" id="1871" customizedId="" mediaFileName="${compiler:sys.shortName}-NETWORK_${compiler:sys.platform}_archive_${compiler:sys.version}-j$$JAVA_INTEGER_VERSION$$" installDir="${compiler:sys.shortName}" overridePrincipalLanguage="false" jreBitType="all" runPostProcessor="false" postProcessor="" failOnPostProcessorError="false" useLegacyMediaFileIds="false" legacyMediaFileIds="" downloadURL="" includeAllDownloadableComponents="true" includedJRE="" manualJREEntry="false">
       <excludedComponents>
         <component id="1031" />
         <component id="1155" />
         <component id="1156" />
+        <component id="1881" />
+        <component id="2110" />
       </excludedComponents>
       <includedDownloadableComponents />
       <excludedLaunchers />
@@ -1864,13 +2039,15 @@ return console.askYesNo(message, true);
       <exclude>
         <entry location=".i4j_fileset_734" fileType="regular" />
         <entry location=".i4j_fileset_880" fileType="regular" />
+        <entry location=".i4j_fileset_882" fileType="regular" />
+        <entry location=".i4j_fileset_1873" fileType="regular" />
       </exclude>
       <variables />
       <autoUpdate useMinUpdatableVersion="false" minUpdatableVersion="" useMaxUpdatableVersion="false" maxUpdatableVersion="">
         <commentFiles />
         <customAttributes />
       </autoUpdate>
-    </windows>
+    </unixArchive>
   </mediaSets>
   <buildIds buildAll="true">
     <mediaSet refId="153" />
@@ -1881,6 +2058,8 @@ return console.askYesNo(message, true);
     <mediaSet refId="1595" />
     <mediaSet refId="1596" />
     <mediaSet refId="1862" />
+    <mediaSet refId="1867" />
+    <mediaSet refId="1871" />
   </buildIds>
   <buildOptions verbose="false" faster="false" disableSigning="false" disableJreBundling="false" debug="false" />
 </install4j>