X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Fjalviewjs%2Fsite-resources%2Fjavascript%2Fjvcontroller.js;fp=utils%2Fjalviewjs%2Fsite-resources%2Fjavascript%2Fjvcontroller.js;h=8116e602e32014b33c8cc98f2f261855b23f54d1;hb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;hp=0000000000000000000000000000000000000000;hpb=9dabc02511e3a334a5749a504f57f69d6c9017bd;p=jalview.git

diff --git a/utils/jalviewjs/site-resources/javascript/jvcontroller.js b/utils/jalviewjs/site-resources/javascript/jvcontroller.js
new file mode 100644
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+++ b/utils/jalviewjs/site-resources/javascript/jvcontroller.js
@@ -0,0 +1,220 @@
+/**
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of 
+ * the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+
+
+$(document).ready(function() {
+	processAllAppletElements();
+});
+
+
+    
+    var currentPage = "applets";
+
+    function processAllAppletElements() {
+    	var apps = document.getElementsByTagName("applet");
+    	for (var i = apps.length; --i >= 0;) {
+    		processAppletElement(apps[i]);
+    	}
+    }
+       
+    var jvid = 0;
+
+    function testBtn(e) {
+    	var element = e.target.appletElement;
+    	var text = element.outerHTML;
+    	
+    	//var
+    	var Info = self.JalviewInfo || {
+  code: null,
+  main: "jalview.bin.Jalview",
+  core: "NONE",
+	
+	
+	width: 850,
+	height: 550,
+  readyFunction: null,
+	serverURL: 'https://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php',
+	j2sPath: 'swingjs/j2s',
+//	console:'sysoutdiv',
+	allowjavascript: true
+}
+    	
+var id = "JVApplet" + jvid++;
+var args = text.replace(/[\n\t]/g, " ").split("<param ");
+Info.j2sAppletID = id;
+Info.jalview_SCREEN_WIDTH= 100, // desktop width -- 0 to hide
+Info.jalview_SCREEN_HEIGHT= 70,  // desktop height -- 0 to hide
+Info.jalview_SCREEN_X= 10,
+Info.jalview_SCREEN_Y= 10,
+Info.jalview_EMBEDDED= true;
+
+
+for (var i in Info) {
+	var v = ("" + Info[i] || "null").replace(/\"/g,"'");
+	args.push("name=\"Info." + i + "\" value=\"" + v + "\""); 
+}
+Info.args = args;
+SwingJS.getApplet(id, Info);
+	document.title = id;
+	e.target.style.visibility="hidden";
+
+    }
+    
+    function processAppletElement(element) {
+        var code = element.getAttribute("code");
+        var parent = element.parentElement;
+        if (code == "jalview.bin.JalviewLite") {
+	    	var text = element.outerHTML;
+	    	console.log(text);
+	    	var btn = document.createElement("button");
+	    	btn.innerHTML = "Start Jalview";
+	    	var a = element.getAttribute("width");
+	    	btn.style.width = (a || 140) + "px";
+	    	a = element.getAttribute("height");
+	    	btn.style.height = (a || 25) + "px";
+	        btn.appletElement = element;
+	        parent.replaceChild(btn, element);        
+	        $(btn).click(testBtn)
+        } else {
+        	parent.removeElement(element);
+        }
+    }
+       
+
+    /** 
+     * Generate an applet tag
+     * 
+     * @param code
+     * @param name
+     * @param archive
+     * @param width
+     * @param height
+     * @param params
+     * @returns  a DOM APPLET element
+     */
+    function createAppletTag(code, name, archive, width, height, params){
+        var app = document.createElement('applet');
+    	app.code= code;
+    	app.width = width;
+    	app.height = height;
+	app.archive = archive;
+
+	var arrayLength = params.length;
+	for (var i = 0; i < arrayLength; i++) {
+    	    //console.log('name : '+ params[i][0] + ' code : '+ params[i][1]);    	    
+    	    var param = document.createElement('param');
+    	    param.name = params[i][0];
+    	    param.value = params[i][1];
+    	    app.appendChild(param);
+	}
+	return app;
+    }
+
+    function readCookie(name) {
+        var nameEQ = name + "=";
+        var ca = document.cookie.split(';');
+        for(var i=0;i < ca.length;i++) {
+            var c = ca[i];
+            while (c.charAt(0)==' ') c = c.substring(1,c.length);
+            if (c.indexOf(nameEQ) == 0) return c.substring(nameEQ.length,c.length);
+        }
+        return null;
+    }
+
+    function setOrUpdateCookie(name, value, days) {
+        var expires;
+        if (days) {
+            var date = new Date();
+            date.setTime(date.getTime() + (days * 24 * 60 * 60 * 1000));
+            expires = "; expires=" + date.toGMTString();
+        }
+        else {
+            expires = "";
+        }
+        document.cookie = name + "=" + value + expires + "; path=/";
+    }
+
+   $(function(){        
+        var url = window.location.href;
+	var end = url.length;
+	var start = url.lastIndexOf("#");
+	var newPage = url.substring(start + 1, end);
+	var page = ((start === -1) ? currentPage : newPage);
+	//alert("page:" + page); 
+       if(page === "embeddedWJmol"){
+         // do nothing embeddedWJmol page already include
+
+            $('#header').load("includes/header_jv.html");
+            //$('#content').load(page + ".html");
+            $('#nav').load("includes/nav_jv.html");
+            $('#footer').load("includes/footer_jv.html"); 
+            $('#'+ currentPage).addClass('active-trail active'); 
+        }else{
+            $('#header').load("includes/header_jv.html");
+            $('#content').load(page + ".html");
+            $('#nav').load("includes/nav_jv.html");
+            $('#footer').load("includes/footer_jv.html"); 
+            $('#'+ currentPage).addClass('active-trail active');  
+
+	    var e = document.getElementById("view_decorated");
+            e.style.display = 'none';
+	}     
+   });
+   
+function doSubmit(target){
+   var currentPage = target+'.html';
+   //alert("page:" + target); 
+   if(target == "embeddedWJmol"){
+      //loadJMolPage();
+      window.location.href = 'embeddedWJmol.html#' + target;
+      $('#content').load(currentPage);
+   }else{
+      window.location.href = 'index.html#' + target;
+      $('#content').load(currentPage);
+   }
+   updateLinks(target);
+}
+
+
+
+function updateLinks(target) {
+    var ul = document.getElementById("menu");
+    var items = ul.getElementsByTagName("li");
+    for (var i = 0; i < items.length; ++i) {
+	removeClass(items[i], "active-trail active");
+    }
+   $('#'+ target).addClass('active-trail active');
+}
+
+function hasClass(ele,cls) {
+  return !!ele.className.match(new RegExp('(\\s|^)'+cls+'(\\s|$)'));
+}
+
+function addClass(ele,cls) {
+  if (!hasClass(ele,cls)) ele.className += " "+cls;
+}
+
+function removeClass(ele,cls) {
+  if (hasClass(ele,cls)) {
+    var reg = new RegExp('(\\s|^)'+cls+'(\\s|$)');
+    ele.className=ele.className.replace(reg,' ');
+  }
+}
+