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+ + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
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+ SUMMARY: NESTED | ENUM CONSTANTS | FIELD | METHOD +DETAIL: ENUM CONSTANTS | FIELD | METHOD
+ + + +
+ +

+ +compbio.data.sequence +
+Enum ConservationMethod

+
+java.lang.Object
+  extended by java.lang.Enum<ConservationMethod>
+      extended by compbio.data.sequence.ConservationMethod
+
+
+
All Implemented Interfaces:
java.io.Serializable, java.lang.Comparable<ConservationMethod>
+
+
+
+
public enum ConservationMethod
extends java.lang.Enum<ConservationMethod>
+ + +

+Enumeration listing of all the supported methods. +

+ +

+

+
Author:
+
Agnieszka Golicz & Peter Troshin
+
+
+ +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Enum Constant Summary
ARMON + +
+           
GERSTEIN + +
+           
JORES + +
+           
KABAT + +
+           
KARLIN + +
+           
LANDGRAF + +
+           
MIRNY + +
+           
NOT_LANCET + +
+           
SANDER + +
+           
SCHNEIDER + +
+           
SHENKIN + +
+           
SMERFS + +
+           
TAYLOR_GAPS + +
+           
TAYLOR_NO_GAPS + +
+           
THOMPSON + +
+           
VALDAR + +
+           
WILLIAMSON + +
+           
ZVELIBIL + +
+           
+  + + + + + + + + + + + + + + + + + + + +
+Method Summary
+static ConservationMethodgetMethod(java.lang.String meth) + +
+           
+static ConservationMethodvalueOf(java.lang.String name) + +
+          Returns the enum constant of this type with the specified name.
+static ConservationMethod[]values() + +
+          Returns an array containing the constants of this enum type, in +the order they are declared.
+  + + + + + + + +
Methods inherited from class java.lang.Enum
compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
+  + + + + + + + +
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
+  +

+ + + + + + + + +
+Enum Constant Detail
+ +

+KABAT

+
+public static final ConservationMethod KABAT
+
+
+
+
+
+ +

+JORES

+
+public static final ConservationMethod JORES
+
+
+
+
+
+ +

+SCHNEIDER

+
+public static final ConservationMethod SCHNEIDER
+
+
+
+
+
+ +

+SHENKIN

+
+public static final ConservationMethod SHENKIN
+
+
+
+
+
+ +

+GERSTEIN

+
+public static final ConservationMethod GERSTEIN
+
+
+
+
+
+ +

+TAYLOR_GAPS

+
+public static final ConservationMethod TAYLOR_GAPS
+
+
+
+
+
+ +

+TAYLOR_NO_GAPS

+
+public static final ConservationMethod TAYLOR_NO_GAPS
+
+
+
+
+
+ +

+ZVELIBIL

+
+public static final ConservationMethod ZVELIBIL
+
+
+
+
+
+ +

+KARLIN

+
+public static final ConservationMethod KARLIN
+
+
+
+
+
+ +

+ARMON

+
+public static final ConservationMethod ARMON
+
+
+
+
+
+ +

+THOMPSON

+
+public static final ConservationMethod THOMPSON
+
+
+
+
+
+ +

+NOT_LANCET

+
+public static final ConservationMethod NOT_LANCET
+
+
+
+
+
+ +

+MIRNY

+
+public static final ConservationMethod MIRNY
+
+
+
+
+
+ +

+WILLIAMSON

+
+public static final ConservationMethod WILLIAMSON
+
+
+
+
+
+ +

+LANDGRAF

+
+public static final ConservationMethod LANDGRAF
+
+
+
+
+
+ +

+SANDER

+
+public static final ConservationMethod SANDER
+
+
+
+
+
+ +

+VALDAR

+
+public static final ConservationMethod VALDAR
+
+
+
+
+
+ +

+SMERFS

+
+public static final ConservationMethod SMERFS
+
+
+
+
+ + + + + + + + +
+Method Detail
+ +

+values

+
+public static ConservationMethod[] values()
+
+
Returns an array containing the constants of this enum type, in +the order they are declared. This method may be used to iterate +over the constants as follows: +
+for (ConservationMethod c : ConservationMethod.values())
+    System.out.println(c);
+
+

+

+ +
Returns:
an array containing the constants of this enum type, in +the order they are declared
+
+
+
+ +

+valueOf

+
+public static ConservationMethod valueOf(java.lang.String name)
+
+
Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.) +

+

+
Parameters:
name - the name of the enum constant to be returned. +
Returns:
the enum constant with the specified name +
Throws: +
java.lang.IllegalArgumentException - if this enum type has no constant +with the specified name +
java.lang.NullPointerException - if the argument is null
+
+
+
+ +

+getMethod

+
+public static ConservationMethod getMethod(java.lang.String meth)
+
+
+
+
+
+ +
+ + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV CLASS  + NEXT CLASS + FRAMES   + NO FRAMES   +  + + + +
+ SUMMARY: NESTED | ENUM CONSTANTS | FIELD | METHOD +DETAIL: ENUM CONSTANTS | FIELD | METHOD
+ + + +
+ + +