X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2FFastaSequence.html;fp=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2FFastaSequence.html;h=0000000000000000000000000000000000000000;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=00d1300a31f78933b24378dbc3b0ccb188199708;hpb=bc3346bd7c1c518fad867d4c60a53779e7516588;p=jabaws.git diff --git a/website/dm_javadoc/compbio/data/sequence/FastaSequence.html b/website/dm_javadoc/compbio/data/sequence/FastaSequence.html deleted file mode 100644 index 00d1300..0000000 --- a/website/dm_javadoc/compbio/data/sequence/FastaSequence.html +++ /dev/null @@ -1,471 +0,0 @@ - - - -
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-java.lang.Object - compbio.data.sequence.FastaSequence --
@Immutable -public class FastaSequence
-A FASTA formatted sequence. Please note that this class does not make any - assumptions as to what sequence it stores e.g. it could be nucleotide, - protein or even gapped alignment sequence! The only guarantee it makes is - that the sequence does not contain white space characters e.g. spaces, new - lines etc -
- -
-
-Constructor Summary | -|
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FastaSequence(String id,
- String sequence)
-
-- Upon construction the any whitespace characters are removed from the - sequence |
-
-Method Summary | -|
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-static int |
-countMatchesInSequence(String theString,
- String theRegExp)
-
-- |
-
- boolean |
-equals(Object obj)
-
-- |
-
- String |
-getFormatedSequence(int width)
-
-- Format sequence per width letter in one string. |
-
- String |
-getFormattedFasta()
-
-- |
-
- String |
-getId()
-
-- Gets the value of id |
-
- int |
-getLength()
-
-- |
-
- String |
-getOnelineFasta()
-
-- |
-
- String |
-getSequence()
-
-- Gets the value of sequence |
-
- int |
-hashCode()
-
-- |
-
- String |
-toString()
-
-- Same as oneLineFasta |
-
Methods inherited from class java.lang.Object | -
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getClass, notify, notifyAll, wait, wait, wait |
-
-Constructor Detail | -
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-public FastaSequence(String id, - String sequence)-
-
id
- sequence
- -Method Detail | -
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-public String getId()-
-
-public String getSequence()-
-
-public static int countMatchesInSequence(String theString, - String theRegExp)-
-public String getFormattedFasta()-
-public String getOnelineFasta()-
-public String getFormatedSequence(int width)-
-
-public int getLength()-
-public String toString()-
-
toString
in class Object
-public int hashCode()-
hashCode
in class Object
-public boolean equals(Object obj)-
equals
in class Object
-
-
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