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+Uses of Class
compbio.data.sequence.UnknownFileFormatException

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+Packages that use UnknownFileFormatException
compbio.data.sequenceA data model for multiple sequence alignment web services and utility methods + that work on the objects of this model. 
+  +

+ + + + + +
+Uses of UnknownFileFormatException in compbio.data.sequence
+  +

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Methods in compbio.data.sequence that throw UnknownFileFormatException
+static java.util.List<FastaSequence>SequenceUtil.openInputStream(java.lang.String inFilePath) + +
+          Reads and parses Fasta or Clustal formatted file into a list of + FastaSequence objects
+static AlignmentClustalAlignmentUtil.readClustalFile(java.io.File file) + +
+           
+static AlignmentClustalAlignmentUtil.readClustalFile(java.io.InputStream instream) + +
+          Read Clustal formatted alignment.
+static java.util.HashMap<java.lang.String,java.util.Set<Score>>SequenceUtil.readDisembl(java.io.InputStream input) + +
+          > Foobar_dundeefriends + + # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 + + # REM465 355-368 + + # HOTLOOPS 190-204 + + # RESIDUE COILS REM465 HOTLOOPS + + M 0.86010 0.88512 0.37094 + + T 0.79983 0.85864 0.44331 + + >Next Sequence name
+static java.util.HashMap<java.lang.String,java.util.Set<Score>>SequenceUtil.readGlobPlot(java.io.InputStream input) + +
+          > Foobar_dundeefriends + + # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 + + # REM465 355-368 + + # HOTLOOPS 190-204 + + # RESIDUE COILS REM465 HOTLOOPS + + M 0.86010 0.88512 0.37094 + + T 0.79983 0.85864 0.44331 + + >Next Sequence name
+static java.util.Map<java.lang.String,Score>SequenceUtil.readIUPred(java.io.File result) + +
+          Read IUPred output
+static java.util.Map<java.lang.String,Score>SequenceUtil.readJRonn(java.io.File result) + +
+           
+static java.util.Map<java.lang.String,Score>SequenceUtil.readJRonn(java.io.InputStream inStream) + +
+          Reader for JRonn horizontal file format
+  +

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