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-See:
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- Description
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| -Class Summary | -|
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| Alignment | -Multiple sequence alignment. | -
| AlignmentMetadata | -Alignment metadata e.g. | -
| ClustalAlignmentUtil | -Tools to read and write clustal formated files | -
| FastaReader | -Reads files with FASTA formatted sequences. | -
| FastaSequence | -A FASTA formatted sequence. | -
| Range | -- |
| Score | -A value class for AACon annotation results storage. | -
| ScoreManager | -- |
| ScoreManager.ScoreHolder | -- |
| SequenceUtil | -Utility class for operations on sequences | -
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| -Enum Summary | -|
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| ConservationMethod | -Enumeration listing of all the supported methods. | -
| DisorderMethod | -- |
| Program | -The list of programmes that can produce alignments | -
| SMERFSConstraints | -Enumeration defining two constraints for SMERFS columns score calculation. | -
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| -Exception Summary | -|
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| UnknownFileFormatException | -- |
-A data model for multiple sequence alignment web services and utility methods - that work on the objects of this model. - Classes in this package have no dependencies to other sources in the project. - They form a base layer of JAva Bioinformatics Analysis Web Services. -
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