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+See:
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+ Description
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+Class Summary | +|
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Alignment | +Multiple sequence alignment. | +
AlignmentMetadata | +Alignment metadata e.g. | +
ClustalAlignmentUtil | +Tools to read and write clustal formated files | +
FastaReader | +Reads files with FASTA formatted sequences. | +
FastaSequence | +A FASTA formatted sequence. | +
Range | ++ |
Score | +A value class for AACon annotation results storage. | +
ScoreManager | ++ |
ScoreManager.ScoreHolder | ++ |
SequenceUtil | +Utility class for operations on sequences | +
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+Enum Summary | +|
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ConservationMethod | +Enumeration listing of all the supported methods. | +
DisorderMethod | ++ |
Program | +The list of programmes that can produce alignments | +
SMERFSConstraints | +Enumeration defining two constraints for SMERFS columns score calculation. | +
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+Exception Summary | +|
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UnknownFileFormatException | ++ |
+A data model for multiple sequence alignment web services and utility methods + that work on the objects of this model. + Classes in this package have no dependencies to other sources in the project. + They form a base layer of JAva Bioinformatics Analysis Web Services. +
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