X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-use.html;h=898f6cac81517050f5111f3a9f76b900337e2c1e;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=d4104fd2f564628a01bb128690c6401a39c98e00;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/dm_javadoc/compbio/data/sequence/package-use.html b/website/dm_javadoc/compbio/data/sequence/package-use.html index d4104fd..898f6ca 100644 --- a/website/dm_javadoc/compbio/data/sequence/package-use.html +++ b/website/dm_javadoc/compbio/data/sequence/package-use.html @@ -2,12 +2,12 @@ - + Uses of Package compbio.data.sequence - + @@ -90,9 +90,17 @@ function windowTitle() Packages that use compbio.data.sequence +compbio.data.msa +Web Service interfaces for JAva Bioinformatics Analysis Web Services.  + + +compbio.data.msa.jaxws +   + + compbio.data.sequence -A data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project.  +A data model for multiple sequence alignment web services and utility methods + that work on the objects of this model.  compbio.metadata @@ -102,6 +110,60 @@ Packages that use  

+ + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.data.msa
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
ScoreManager + +
+           
+  +

+ + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.data.msa.jaxws
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
ScoreManager + +
+           
+  +

@@ -121,6 +183,18 @@ Classes in compbio           Alignment metadata e.g. + + + + + + +          The list of programmes that can produce alignments + + + + + + + + + + + + + + +
ConservationMethod + +
+          Enumeration listing of all the supported methods.
DisorderMethod + +
+           
FastaSequence
@@ -130,7 +204,37 @@ Classes in compbio 		Program
-          Programmes that can produce alignments
Range + +
+           
Score + +
+          A value class for AACon annotation results storage.
ScoreManager + +
+           
ScoreManager.ScoreHolder + +
+           
SMERFSConstraints + +
+          Enumeration defining two constraints for SMERFS columns score calculation.
UnknownFileFormatException