X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fmetadata%2Fclass-use%2FPreset.html;h=49a12b97f9f9857b128528e1174093baf54b2ec9;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=7da25a690c86a4f49310ac4a8e8620c2ad4bf140;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/dm_javadoc/compbio/metadata/class-use/Preset.html b/website/dm_javadoc/compbio/metadata/class-use/Preset.html index 7da25a6..49a12b9 100644 --- a/website/dm_javadoc/compbio/metadata/class-use/Preset.html +++ b/website/dm_javadoc/compbio/metadata/class-use/Preset.html @@ -2,12 +2,12 @@ - + Uses of Class compbio.metadata.Preset - + @@ -90,6 +90,14 @@ function windowTitle() Packages that use Preset +compbio.data.msa +Web Service interfaces for JAva Bioinformatics Analysis Web Services.  + + +compbio.data.msa.jaxws +   + + compbio.metadata A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.  @@ -97,6 +105,98 @@ Packages that use + + + + +
+Uses of Preset in compbio.data.msa
+  +

+ + + + + + + + + + + + + +
Methods in compbio.data.msa with parameters of type Preset
+ StringMsaWS.presetAlign(List<FastaSequence> sequences, + Preset<T> preset) + +
+          Align a list of sequences with preset.
+ StringSequenceAnnotation.presetAnalize(List<FastaSequence> sequences, + Preset<T> preset) + +
+          Analyse the sequences according to the preset settings.
+  +

+ + + + + +
+Uses of Preset in compbio.data.msa.jaxws
+  +

+ + + + + + + + + + + + + +
Methods in compbio.data.msa.jaxws that return Preset
+ PresetPresetAnalize.getPreset() + +
+           
+ PresetPresetAlign.getPreset() + +
+           
+  +

+ + + + + + + + + + + + + +
Methods in compbio.data.msa.jaxws with parameters of type Preset
+ voidPresetAnalize.setPreset(Preset preset) + +
+           
+ voidPresetAlign.setPreset(Preset preset) + +
+           
+  +

@@ -114,7 +214,7 @@ Uses of - @@ -129,7 +229,7 @@ Uses of + List<Preset<T>> -
 Preset<T>PresetManager.getPresetByName(java.lang.String presetName) +PresetManager.getPresetByName(String presetName)
           		 - java.util.List<Preset<T>> PresetManager.getPresets()
@@ -146,7 +246,7 @@ Uses of 		 voidPresetManager.setPresets(java.util.List<Preset<T>> presets) +PresetManager.setPresets(List<Preset<T>> presets)