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-See:
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- Description
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- -
| -Interface Summary | -|
|---|---|
| Argument<T> | -An unmodifiable view for the options and parameters, with one exception - it - allows to set a value | -
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| -Class Summary | -|
|---|---|
| ChunkHolder | -Represents a chunk of a string data together with the position in a file for - the next read operation. | -
| Limit<T> | -A value object containing a maximum number of sequences and a maximum average - sequence length for a preset. | -
| LimitsManager<T> | -A collection of Limits | -
| Option<T> | -Command line option/flag or multiple exclusive options with no value. | -
| Parameter<T> | -A single value containing an option supported by the web service e.g. | -
| Preset<T> | -Collection of Options and Parameters with their values | -
| PresetManager<T> | -Collection of presets and methods to manipulate them @see Preset |
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| RunnerConfig<T> | -The list of Parameters and Options supported by executable. |
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| ValueConstrain | -The type and the lower and upper boundaries for numerical value. | -
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| -Enum Summary | -|
|---|---|
| JobStatus | -The status of the job. | -
| ValueConstrain.Type | -- |
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| -Exception Summary | -|
|---|---|
| JobExecutionException | -JobExecutionException is thrown wherever the results of the calculation - cannot be obtained. | -
| JobSubmissionException | -Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException. | -
| LimitExceededException | -This exception is thrown if the task larger in size that the limit that - applies to the calculation. | -
| ResultNotAvailableException | -ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained. | -
| UnsupportedRuntimeException | -Indicates that the server could not execute native executables. | -
| WrongParameterException | -WrongParameterException is thrown wherever the RunnerConfig object
- does not match the actual runnable or then attempting to set the value of
- Argument to invalid value. |
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-A meta-data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project. - They form a base layer of JAva Bioinformatics Analysis Web Services (JABAWS) -
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