-AAConClient -

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fws%2Fclient%2FAAConClient.html;fp=website%2Fdm_javadoc%2Fcompbio%2Fws%2Fclient%2FAAConClient.html;h=0000000000000000000000000000000000000000;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=71236957d5861176163eda31fad440bd50b05bf7;hpb=bc3346bd7c1c518fad867d4c60a53779e7516588;p=jabaws.git diff --git a/website/dm_javadoc/compbio/ws/client/AAConClient.html b/website/dm_javadoc/compbio/ws/client/AAConClient.html deleted file mode 100644 index 7123695..0000000 --- a/website/dm_javadoc/compbio/ws/client/AAConClient.html +++ /dev/null @@ -1,276 +0,0 @@ - - - - - - -AAConClient - - - - - - - - - - - - -

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- -compbio.ws.client -
-Class AAConClient

-java.lang.Object
-  compbio.ws.client.AAConClient
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public class AAConClient
extends Object
extends Object

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-A command line client for AACon web service -

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Version:: 1.0
Author:: pvtroshin

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-Method Summary
-static SequenceAnnotation<compbio.ws.server.AAConWS> connect() - -
- Connects to a AACon web service by the host and the service name
-static void main(String[] args) - -
- Starts command line client, if no parameters are supplied prints help.
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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-Method Summary
-`static SequenceAnnotation<compbio.ws.server.AAConWS>`	`connect()` - - - Connects to a AACon web service by the host and the service name
-`static void`	`main(String[] args)` - - - Starts command line client, if no parameters are supplied prints help.

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

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-Method Detail
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-connect

-public static SequenceAnnotation<compbio.ws.server.AAConWS> connect()
-                                                             throws WebServiceException

Connects to a AACon web service by the host and the service name -

Returns:: AlignmentAnnotation -
Throws: -: WebServiceException - if cannot connect to a web service

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-main

-public static void main(String[] args)

Starts command line client, if no parameters are supplied prints help. -

Parameters:: args - Usage: ACTION [OPTIONS] - - -i= - full path to fasta or Clustal formatted - alignment file - - -parameters - lists parameters supported by web service - - -presets - lists presets supported by web service - - -limits - lists web services limits. Please note that if input - file is specified other actions are ignored - - OPTIONS: (only for use with -i action): - - -r= - name of the preset to use - - -o= - full path to the file where to write results - -f= - the name of the file with the list - of parameters to use. Please note that -r and -f options - cannot be used together. Conservation is calculated with - either a preset or parameters from the file, but not both!

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