X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-1.html;h=5690d4d9213cd67cb88c3c05e65147d9761863b0;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=a97515510ae6c37f2521e82f9cda8f623479b166;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/dm_javadoc/index-files/index-1.html b/website/dm_javadoc/index-files/index-1.html index a975155..5690d4d 100644 --- a/website/dm_javadoc/index-files/index-1.html +++ b/website/dm_javadoc/index-files/index-1.html @@ -2,12 +2,12 @@ - + A-Index - + @@ -85,7 +85,7 @@ function windowTitle()
AA - Static variable in class compbio.data.sequence.SequenceUtil
Valid Amino acids -
addOption(Option<T>) - +
AAConClient - Class in compbio.ws.client
A command line client for AACon web service
addOption(Option<T>) - Method in class compbio.metadata.RunnerConfig
Adds Option to the internal list of options
addOptionNames(String...) - @@ -100,6 +100,9 @@ Method in class compbio.metadata.addPossibleValues(String...) - Method in class compbio.metadata.Parameter
  +
Align - Class in compbio.data.msa.jaxws
 
Align() - +Constructor for class compbio.data.msa.jaxws.Align +
 
align(List<FastaSequence>) - Method in interface compbio.data.msa.MsaWS
Align a list of sequences with default settings. @@ -112,14 +115,32 @@ Constructor for class compbio.data.sequence.AlignmentMetadata - Class in compbio.data.sequence
Alignment metadata e.g.
AlignmentMetadata(Program, char) - Constructor for class compbio.data.sequence.AlignmentMetadata
  +
AlignResponse - Class in compbio.data.msa.jaxws
 
AlignResponse() - +Constructor for class compbio.data.msa.jaxws.AlignResponse +
 
AMBIGUOUS_AA - Static variable in class compbio.data.sequence.SequenceUtil
Same as AA pattern but with two additional letters - XU
AMBIGUOUS_NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil
Ambiguous nucleotide +
Analize - Class in compbio.data.msa.jaxws
 
Analize() - +Constructor for class compbio.data.msa.jaxws.Analize +
  +
analize(List<FastaSequence>) - +Method in interface compbio.data.msa.SequenceAnnotation +
Analyse the sequences. +
AnalizeResponse - Class in compbio.data.msa.jaxws
 
AnalizeResponse() - +Constructor for class compbio.data.msa.jaxws.AnalizeResponse +
 
Argument<T> - Interface in compbio.metadata
An unmodifiable view for the options and parameters, with one exception - it - allows to set a value + allows to set a value
asMap() - +Method in class compbio.data.sequence.ScoreManager +
  +
asSet() - +Method in class compbio.data.sequence.ScoreManager +
  +