X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-1.html;h=5690d4d9213cd67cb88c3c05e65147d9761863b0;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=a97515510ae6c37f2521e82f9cda8f623479b166;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git
diff --git a/website/dm_javadoc/index-files/index-1.html b/website/dm_javadoc/index-files/index-1.html
index a975155..5690d4d 100644
--- a/website/dm_javadoc/index-files/index-1.html
+++ b/website/dm_javadoc/index-files/index-1.html
@@ -2,12 +2,12 @@
-
+
A-Index
-
+
@@ -85,7 +85,7 @@ function windowTitle()
AA -
Static variable in class compbio.data.sequence.SequenceUtil
Valid Amino acids
- addOption(Option<T>) -
+AAConClient - Class in compbio.ws.client A command line client for AACon web service addOption(Option<T>) -
Method in class compbio.metadata.RunnerConfig
Adds Option to the internal list of options
addOptionNames(String...) -
@@ -100,6 +100,9 @@ Method in class compbio.metadata.addPossibleValues(String...) -
Method in class compbio.metadata.Parameter
+ Align - Class in compbio.data.msa.jaxws Align() -
+Constructor for class compbio.data.msa.jaxws.Align
+
align(List<FastaSequence>) -
Method in interface compbio.data.msa.MsaWS
Align a list of sequences with default settings.
@@ -112,14 +115,32 @@ Constructor for class compbio.data.sequence.AlignmentMetadata - Class in compbio.data.sequence Alignment metadata e.g. AlignmentMetadata(Program, char) -
Constructor for class compbio.data.sequence.AlignmentMetadata
+ AlignResponse - Class in compbio.data.msa.jaxws AlignResponse() -
+Constructor for class compbio.data.msa.jaxws.AlignResponse
+
AMBIGUOUS_AA -
Static variable in class compbio.data.sequence.SequenceUtil
Same as AA pattern but with two additional letters - XU
AMBIGUOUS_NUCLEOTIDE -
Static variable in class compbio.data.sequence.SequenceUtil
Ambiguous nucleotide
+ Analize - Class in compbio.data.msa.jaxws Analize() -
+Constructor for class compbio.data.msa.jaxws.Analize
+
+ analize(List<FastaSequence>) -
+Method in interface compbio.data.msa.SequenceAnnotation
+Analyse the sequences.
+ AnalizeResponse - Class in compbio.data.msa.jaxws AnalizeResponse() -
+Constructor for class compbio.data.msa.jaxws.AnalizeResponse
+
Argument <T > - Interface in compbio.metadata An unmodifiable view for the options and parameters, with one exception - it
- allows to set a value
+ allows to set a value asMap() -
+Method in class compbio.data.sequence.ScoreManager
+
+ asSet() -
+Method in class compbio.data.sequence.ScoreManager
+
+