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newInstance(Map<String, Set<Score>>) - -Static method in class compbio.data.sequence.ScoreManager -: -
newInstanceSingleScore(Map<String, Score>) - -Static method in class compbio.data.sequence.ScoreManager -: -
newInstanceSingleSequence(Set<Score>) - -Static method in class compbio.data.sequence.ScoreManager -: -
newLimitExceeded(Limit<?>, List<FastaSequence>) - -Static method in exception compbio.metadata.LimitExceededException -: -
next() - -Method in class compbio.data.sequence.FastaReader -: Reads the next FastaSequence from the input -
NON_AA - -Static variable in class compbio.data.sequence.SequenceUtil -: inversion of AA pattern -
NON_NUCLEOTIDE - -Static variable in class compbio.data.sequence.SequenceUtil -: Non nucleotide -
NONWORD - -Static variable in class compbio.data.sequence.SequenceUtil -: Non word -
NUCLEOTIDE - -Static variable in class compbio.data.sequence.SequenceUtil -: Nucleotides a, t, g, c, u -