+R-Index +

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-15.html;fp=website%2Fdm_javadoc%2Findex-files%2Findex-15.html;h=fe911ae6169b96f040837292d219d8381cd8620a;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/dm_javadoc/index-files/index-15.html b/website/dm_javadoc/index-files/index-15.html new file mode 100644 index 0000000..fe911ae --- /dev/null +++ b/website/dm_javadoc/index-files/index-15.html @@ -0,0 +1,231 @@ + + + + + + +R-Index + + + + + + + + + + + + +

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+R

Range - Class in compbio.data.sequence
Range(int, int) - +Constructor for class compbio.data.sequence.Range +: +
Range(String[]) - +Constructor for class compbio.data.sequence.Range +: +
readAAConResults(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +: Read AACon result with no alignment files. +
readClustalFile(InputStream) - +Static method in class compbio.data.sequence.ClustalAlignmentUtil +: Read Clustal formatted alignment. +
readClustalFile(File) - +Static method in class compbio.data.sequence.ClustalAlignmentUtil +: +
readDisembl(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +: > Foobar_dundeefriends + + # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 + + # REM465 355-368 + + # HOTLOOPS 190-204 + + # RESIDUE COILS REM465 HOTLOOPS + + M 0.86010 0.88512 0.37094 + + T 0.79983 0.85864 0.44331 + + >Next Sequence name +
readFasta(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +: Reads fasta sequences from inStream into the list of FastaSequence + objects +
readGlobPlot(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +: > Foobar_dundeefriends + + # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 + + # REM465 355-368 + + # HOTLOOPS 190-204 + + # RESIDUE COILS REM465 HOTLOOPS + + M 0.86010 0.88512 0.37094 + + T 0.79983 0.85864 0.44331 + + >Next Sequence name +
readIUPred(File) - +Static method in class compbio.data.sequence.SequenceUtil +: Read IUPred output +
readJRonn(File) - +Static method in class compbio.data.sequence.SequenceUtil +: +
readJRonn(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +: Reader for JRonn horizontal file format +
RegistryWS - Interface in compbio.data.msa: JABAWS services registry
remove() - +Method in class compbio.data.sequence.FastaReader +: Not implemented +
removeArgument(String) - +Method in class compbio.metadata.RunnerConfig +: Removes the argument Argument if found. +
removeArgumentByOptionName(String) - +Method in class compbio.metadata.RunnerConfig +: Removes the argument which can be a Parameter or an Option instance by + the value in element of the runner configuration + descriptor. +
ResultNotAvailableException - Exception in compbio.metadata: ResultNotAvailableException is thrown wherever the results of the calculation + cannot be obtained.
ResultNotAvailableException(String) - +Constructor for exception compbio.metadata.ResultNotAvailableException +: +
ResultNotAvailableException(Throwable) - +Constructor for exception compbio.metadata.ResultNotAvailableException +: +
ResultNotAvailableException(String, Throwable) - +Constructor for exception compbio.metadata.ResultNotAvailableException +: +
ResultNotAvailableExceptionBean - Class in compbio.data.msa.jaxws: This class was generated by the JAX-WS RI.
ResultNotAvailableExceptionBean() - +Constructor for class compbio.data.msa.jaxws.ResultNotAvailableExceptionBean +: +
RunnerConfig<T> - Class in compbio.metadata: The list of Parameters and Options supported by executable.
RunnerConfig() - +Constructor for class compbio.metadata.RunnerConfig +: +