+Program +

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+ SUMMARY: NESTED | ENUM CONSTANTS | FIELD | METHOD

+DETAIL: ENUM CONSTANTS | FIELD | METHOD

+ + + +

+ +

+ +compbio.data.sequence +
+Enum Program

+java.lang.Object
+  java.lang.Enum<Program>
+      compbio.data.sequence.Program
+

All Implemented Interfaces:: Serializable, Comparable<Program>

public enum Program
extends Enum<Program>
extends Enum<Program>

+ + +

+The list of programmes that can produce alignments +

+ +

Author:: pvtroshin

+ +

+ + + + + + + + + + + + + + + + + + + + + + +
+Enum Constant Summary
CLUSTAL + +
+          ClustalW
MAFFT + +
+          Mafft
MUSCLE + +
+          Muscle
Probcons + +
+          Probcons
Tcoffee + +
+          Tcoffee
+ + + + + + + + + + + + + + + + +
+Method Summary
+static Program valueOf(String name) + +
+          Returns the enum constant of this type with the specified name.
+static Program[] values() + +
+          Returns an array containing the constants of this enum type, in +the order they are declared.
+ + + + + + + + +
Methods inherited from class java.lang.Enum
compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
+ + + + + + + + +
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
+ +

+Enum Constant Summary
`CLUSTAL` + + + ClustalW
`MAFFT` + + + Mafft
`MUSCLE` + + + Muscle
`Probcons` + + + Probcons
`Tcoffee` + + + Tcoffee

+Method Summary
+`static Program`	`valueOf(String name)` + + + Returns the enum constant of this type with the specified name.
+`static Program[]`	`values()` + + + Returns an array containing the constants of this enum type, in +the order they are declared.

Methods inherited from class java.lang.Enum
`compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf`

Methods inherited from class java.lang.Object
`getClass, notify, notifyAll, wait, wait, wait`

+ + + + + + + + +
+Enum Constant Detail
+ +

+CLUSTAL

+public static final Program CLUSTAL

ClustalW +

+ +

+MAFFT

+public static final Program MAFFT

Mafft +

+ +

+MUSCLE

+public static final Program MUSCLE

Muscle +

+ +

+Tcoffee

+public static final Program Tcoffee

Tcoffee +

+ +

+Probcons

+public static final Program Probcons

Probcons +

+ +

+ + + + + + + + +

+Method Detail

+ +

+values

+public static Program[] values()

Returns an array containing the constants of this enum type, in +the order they are declared. This method may be used to iterate +over the constants as follows: +

+for (Program c : Program.values())
+    System.out.println(c);
+

Returns:: an array containing the constants of this enum type, in +the order they are declared

+ +

+valueOf

+public static Program valueOf(String name)

Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.) +

Parameters:: name - the name of the enum constant to be returned. +
Returns:: the enum constant with the specified name +
Throws: +: IllegalArgumentException - if this enum type has no constant +with the specified name +; NullPointerException - if the argument is null

+ +