X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fclass-use%2FAlignment.html;h=ac64d26e8881561a79859560d03d2c0462c0b992;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=af197d7c6b66c85d9f09086ffd7d0cac604a3c89;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/full_javadoc/compbio/data/sequence/class-use/Alignment.html b/website/full_javadoc/compbio/data/sequence/class-use/Alignment.html index af197d7..ac64d26 100644 --- a/website/full_javadoc/compbio/data/sequence/class-use/Alignment.html +++ b/website/full_javadoc/compbio/data/sequence/class-use/Alignment.html @@ -2,12 +2,12 @@
- + Alignment
MsaWS.getResult(java.lang.String jobId)
+MsaWS.getResult(String jobId)
static Alignment
ClustalAlignmentUtil.readClustalFile(java.io.File file)
+ClustalAlignmentUtil.readClustalFile(File file)
static Alignment
ClustalAlignmentUtil.readClustalFile(java.io.InputStream instream)
+ClustalAlignmentUtil.readClustalFile(InputStream instream)
static void
ClustalAlignmentUtil.writeClustalAlignment(java.io.OutputStream outStream,
+ClustalAlignmentUtil.writeClustalAlignment(Writer out,
Alignment alignment)
@@ -251,8 +251,8 @@ Uses of
static Alignment
-Util.readClustalFile(java.lang.String workDirectory,
- java.lang.String clustFile)
+Util.readClustalFile(String workDirectory,
+ String clustFile)
@@ -277,7 +277,7 @@ Uses of
Alignment
-Tcoffee.getResults(java.lang.String workDirectory)
+Mafft.getResults(String workDirectory)
@@ -285,7 +285,7 @@ Uses of
Alignment
-ClustalW.getResults(java.lang.String workDirectory)
+ClustalW.getResults(String workDirectory)
@@ -293,7 +293,7 @@ Uses of
Alignment
-Probcons.getResults(java.lang.String workDirectory)
+Tcoffee.getResults(String workDirectory)
@@ -301,7 +301,7 @@ Uses of
Alignment
-Muscle.getResults(java.lang.String workDirectory)
+Muscle.getResults(String workDirectory)
@@ -309,7 +309,15 @@ Uses of
Alignment
-Mafft.getResults(java.lang.String workDirectory)
+ClustalO.getResults(String workDirectory)
+
+
+
+
Alignment
Probcons.getResults(String workDirectory)
Alignment
TcoffeeWS.getResult(java.lang.String jobId)
+ClustalWS.getResult(String jobId)
+
+ Alignment
_MsaService.getResult(String jobId)
+
+ Alignment
MuscleWS.getResult(String jobId)
Alignment
ProbconsWS.getResult(java.lang.String jobId)
+MafftWS.getResult(String jobId)
Alignment
MuscleWS.getResult(java.lang.String jobId)
+TcoffeeWS.getResult(String jobId)
Alignment
MafftWS.getResult(java.lang.String jobId)
+ProbconsWS.getResult(String jobId)
Alignment
ClustalWS.getResult(java.lang.String jobId)
+ClustalOWS.getResult(String jobId)