X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fclass-use%2FUnknownFileFormatException.html;fp=website%2Ffull_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fclass-use%2FUnknownFileFormatException.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=2ee95c5a608e473656a21c8299ff0ba4a6d6bf83;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/data/sequence/class-use/UnknownFileFormatException.html b/website/full_javadoc/compbio/data/sequence/class-use/UnknownFileFormatException.html deleted file mode 100644 index 2ee95c5..0000000 --- a/website/full_javadoc/compbio/data/sequence/class-use/UnknownFileFormatException.html +++ /dev/null @@ -1,305 +0,0 @@ - - - -
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-Packages that use UnknownFileFormatException | -|
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compbio.data.sequence | -A data model for multiple sequence alignment web services and utility methods - that work on the objects of this model. | -
compbio.runner | -Utilities commonly used by all runners. | -
-Uses of UnknownFileFormatException in compbio.data.sequence | -
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Methods in compbio.data.sequence that throw UnknownFileFormatException | -|
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-static List<FastaSequence> |
-SequenceUtil.openInputStream(String inFilePath)
-
-- Reads and parses Fasta or Clustal formatted file into a list of - FastaSequence objects |
-
-static Alignment |
-ClustalAlignmentUtil.readClustalFile(File file)
-
-- |
-
-static Alignment |
-ClustalAlignmentUtil.readClustalFile(InputStream instream)
-
-- Read Clustal formatted alignment. |
-
-static HashMap<String,Set<Score>> |
-SequenceUtil.readDisembl(InputStream input)
-
-- > Foobar_dundeefriends - - # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 - - # REM465 355-368 - - # HOTLOOPS 190-204 - - # RESIDUE COILS REM465 HOTLOOPS - - M 0.86010 0.88512 0.37094 - - T 0.79983 0.85864 0.44331 - - >Next Sequence name |
-
-static HashMap<String,Set<Score>> |
-SequenceUtil.readGlobPlot(InputStream input)
-
-- > Foobar_dundeefriends - - # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 - - # REM465 355-368 - - # HOTLOOPS 190-204 - - # RESIDUE COILS REM465 HOTLOOPS - - M 0.86010 0.88512 0.37094 - - T 0.79983 0.85864 0.44331 - - >Next Sequence name |
-
-static Map<String,Score> |
-SequenceUtil.readIUPred(File result)
-
-- Read IUPred output |
-
-static Map<String,Score> |
-SequenceUtil.readJRonn(File result)
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-static Map<String,Score> |
-SequenceUtil.readJRonn(InputStream inStream)
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-- Reader for JRonn horizontal file format |
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-Uses of UnknownFileFormatException in compbio.runner | -
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Methods in compbio.runner that throw UnknownFileFormatException | -|
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-static Alignment |
-Util.readClustalFile(String workDirectory,
- String clustFile)
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-- |
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-static Map<String,Score> |
-Util.readJronnFile(String workDirectory,
- String clustFile)
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