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-Uses of Package
compbio.data.sequence

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-Packages that use compbio.data.sequence
compbio.data.msaWeb Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.data.msa.jaxws  
compbio.data.sequenceA data model for multiple sequence alignment web services and utility methods - that work on the objects of this model. 
compbio.engine  
compbio.metadataA meta-data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project. 
compbio.pipeline._jpred  
compbio.runnerUtilities commonly used by all runners. 
compbio.runner.conservation  
compbio.runner.disorder  
compbio.runner.msaWrappers for native executables for multiple sequence alignment (msa) 
compbio.ws.server  
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-Classes in compbio.data.sequence used by compbio.data.msa
Alignment - -
-          Multiple sequence alignment.
FastaSequence - -
-          A FASTA formatted sequence.
ScoreManager - -
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-Classes in compbio.data.sequence used by compbio.data.msa.jaxws
Alignment - -
-          Multiple sequence alignment.
FastaSequence - -
-          A FASTA formatted sequence.
ScoreManager - -
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-Classes in compbio.data.sequence used by compbio.data.sequence
Alignment - -
-          Multiple sequence alignment.
AlignmentMetadata - -
-          Alignment metadata e.g.
ConservationMethod - -
-          Enumeration listing of all the supported methods.
DisorderMethod - -
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FastaSequence - -
-          A FASTA formatted sequence.
Program - -
-          The list of programmes that can produce alignments
Range - -
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Score - -
-          A value class for AACon annotation results storage.
ScoreManager - -
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ScoreManager.ScoreHolder - -
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SMERFSConstraints - -
-          Enumeration defining two constraints for SMERFS columns score calculation.
UnknownFileFormatException - -
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-Classes in compbio.data.sequence used by compbio.engine
FastaSequence - -
-          A FASTA formatted sequence.
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-Classes in compbio.data.sequence used by compbio.metadata
FastaSequence - -
-          A FASTA formatted sequence.
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-Classes in compbio.data.sequence used by compbio.pipeline._jpred
FastaSequence - -
-          A FASTA formatted sequence.
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-Classes in compbio.data.sequence used by compbio.runner
Alignment - -
-          Multiple sequence alignment.
FastaSequence - -
-          A FASTA formatted sequence.
Score - -
-          A value class for AACon annotation results storage.
UnknownFileFormatException - -
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-Classes in compbio.data.sequence used by compbio.runner.conservation
ScoreManager - -
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-Classes in compbio.data.sequence used by compbio.runner.disorder
ScoreManager - -
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-Classes in compbio.data.sequence used by compbio.runner.msa
Alignment - -
-          Multiple sequence alignment.
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-Classes in compbio.data.sequence used by compbio.ws.server
Alignment - -
-          Multiple sequence alignment.
FastaSequence - -
-          A FASTA formatted sequence.
ScoreManager - -
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Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
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