X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-use.html;fp=website%2Ffull_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-use.html;h=9f4bc2f3137887b8c6a5c29257364f7f5c5a5454;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/data/sequence/package-use.html b/website/full_javadoc/compbio/data/sequence/package-use.html new file mode 100644 index 0000000..9f4bc2f --- /dev/null +++ b/website/full_javadoc/compbio/data/sequence/package-use.html @@ -0,0 +1,482 @@ + + + + + + +Uses of Package compbio.data.sequence + + + + + + + + + + + + +
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Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
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+Uses of Package
compbio.data.sequence

+
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+Packages that use compbio.data.sequence
compbio.data.msaWeb Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.data.msa.jaxws  
compbio.data.sequenceA data model for multiple sequence alignment web services and utility methods + that work on the objects of this model. 
compbio.engine  
compbio.metadataA meta-data model for multiple sequence alignment web services + Classes in this package have no dependencies to other sources in the project. 
compbio.pipeline._jpred  
compbio.runnerUtilities commonly used by all runners. 
compbio.runner.conservation  
compbio.runner.disorder  
compbio.runner.msaWrappers for native executables for multiple sequence alignment (msa) 
compbio.ws.server  
+  +

+ + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.data.msa
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
ScoreManager + +
+           
+  +

+ + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.data.msa.jaxws
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
ScoreManager + +
+           
+  +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.data.sequence
Alignment + +
+          Multiple sequence alignment.
AlignmentMetadata + +
+          Alignment metadata e.g.
ConservationMethod + +
+          Enumeration listing of all the supported methods.
DisorderMethod + +
+           
FastaSequence + +
+          A FASTA formatted sequence.
Program + +
+          The list of programmes that can produce alignments
Range + +
+           
Score + +
+          A value class for AACon annotation results storage.
ScoreManager + +
+           
ScoreManager.ScoreHolder + +
+           
SMERFSConstraints + +
+          Enumeration defining two constraints for SMERFS columns score calculation.
UnknownFileFormatException + +
+           
+  +

+ + + + + + + + +
+Classes in compbio.data.sequence used by compbio.engine
FastaSequence + +
+          A FASTA formatted sequence.
+  +

+ + + + + + + + +
+Classes in compbio.data.sequence used by compbio.metadata
FastaSequence + +
+          A FASTA formatted sequence.
+  +

+ + + + + + + + +
+Classes in compbio.data.sequence used by compbio.pipeline._jpred
FastaSequence + +
+          A FASTA formatted sequence.
+  +

+ + + + + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.runner
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
Score + +
+          A value class for AACon annotation results storage.
UnknownFileFormatException + +
+           
+  +

+ + + + + + + + +
+Classes in compbio.data.sequence used by compbio.runner.conservation
ScoreManager + +
+           
+  +

+ + + + + + + + +
+Classes in compbio.data.sequence used by compbio.runner.disorder
ScoreManager + +
+           
+  +

+ + + + + + + + +
+Classes in compbio.data.sequence used by compbio.runner.msa
Alignment + +
+          Multiple sequence alignment.
+  +

+ + + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.ws.server
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
ScoreManager + +
+           
+  +

+

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Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
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