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Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
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- -compbio.engine.client -
-Interface Executable<T>

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Type Parameters:
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All Known Subinterfaces:
ConfiguredExecutable<T>, PipedExecutable<T>
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All Known Implementing Classes:
_SkeletalCommandBuilder, AACon, BlastAll, ClustalO, ClustalW, ConfExecutable, Disembl, GlobPlot, IUPred, Jronn, Mafft, Mcl, Muscle, NetNglyc, OB, Probcons, PSIBlast, Ronn, RPSBlast, SkeletalExecutable, Tcoffee
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public interface Executable<T>
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-Interface to a native executable. -

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Author:
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pvtroshin
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-Nested Class Summary
-static classExecutable.ExecProvider - -
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-Method Summary
- Executable<T>addParameters(List<String> parameters) - -
-          Adds parameter to the list of parameters for a native executable
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- List<String>getCreatedFiles() - -
-          Deprecated. 
- StringgetError() - -
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- CommandBuilder<T>getParameters(Executable.ExecProvider provider) - -
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- Executable<?>loadRunConfiguration(RunConfiguration rconfig) - -
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-Method Detail
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-addParameters

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-Executable<T> addParameters(List<String> parameters)
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Adds parameter to the list of parameters for a native executable -

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Returns:
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-getCreatedFiles

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-@Deprecated
-List<String> getCreatedFiles()
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-getInput

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-String getInput()
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-getOutput

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-String getOutput()
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-getError

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-String getError()
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-getParameters

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-CommandBuilder<T> getParameters(Executable.ExecProvider provider)
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-getResults

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-<V> V getResults(String directory)
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ResultNotAvailableException
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-loadRunConfiguration

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-Executable<?> loadRunConfiguration(RunConfiguration rconfig)
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-getLimit

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-Limit<T> getLimit(String presetName)
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-getLimits

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-LimitsManager<T> getLimits()
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-getClusterJobSettings

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-String getClusterJobSettings()
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Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
-		 - -
- PREV CLASS  - NEXT CLASS - FRAMES   - NO FRAMES   -  - - - -
- SUMMARY: NESTED | FIELD | CONSTR | METHOD -DETAIL: FIELD | CONSTR | METHOD
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