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Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
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- -

- -compbio.engine.client -
-Class Util

-
-java.lang.Object
-  extended by compbio.engine.client.Util
-
-
-
-
public final class Util
extends Object
- - -

-

- -

- - - - - - - - - - - -
-Constructor Summary
Util() - -
-           
-  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-Method Summary
-static StringconvertToAbsolute(String relativePath) - -
-           
-static StringgetCommand(Executable.ExecProvider provider, - Class<?> clazz) - -
-           
-static StringgetExecProperty(String propertySpec, - Class<?> clazz) - -
-           
-static StringgetExecProperty(String propertySpec, - Executable<?> exec) - -
-           
-static StringgetFullPath(String workDirectory, - String fileName) - -
-           
-static StringgetJava() - -
-          Returns the absolute path to the Java executable from JAVA_HOME
-static - - - - -
-<T> LimitsManager<T>
-		getLimits(Class<T> clazz) - -
-          For now just assume that all parameters which came in needs setting it - will be a client responsibility to prepare RunnerConfig object then
-static Executable.ExecProvidergetSupportedRuntimes(Class<?> clazz) - -
-           
-static booleanisJavaLibrary(Class<?> clazz) - -
-          Returns true of executableName.jar.file property has some value in the - Executable.properties file, false otherwise.
-static booleanisMarked(String workDirectory, - JobStatus marker) - -
-           
-static booleanisValidJobId(String key) - -
-           
-static ConfiguredExecutable<?>loadExecutable(String taskId) - -
-           
-static Map<String,String>mergeEnvVariables(Map<String,String> sysEnvTobeModified, - Map<String,String> variables) - -
-           
-static voidwriteFile(String workDirectory, - String fileAndEventName, - String content, - boolean override) - -
-           
-static booleanwriteMarker(String workDirectory, - JobStatus fileType) - -
-           
-static voidwriteStatFile(String workDirectory, - String fileAndEventName) - -
-           
-  - - - - - - - -
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
-  -

- - - - - - - - -
-Constructor Detail
- -

-Util

-
-public Util()
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-Method Detail
- -

-isValidJobId

-
-public static boolean isValidJobId(String key)
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- -

-writeStatFile

-
-public static void writeStatFile(String workDirectory,
-                                 String fileAndEventName)
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-
-
-
-
-
- -

-writeFile

-
-public static void writeFile(String workDirectory,
-                             String fileAndEventName,
-                             String content,
-                             boolean override)
-
-
-
-
-
-
- -

-writeMarker

-
-public static final boolean writeMarker(String workDirectory,
-                                        JobStatus fileType)
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-
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-
-
- -

-isMarked

-
-public static boolean isMarked(String workDirectory,
-                               JobStatus marker)
-
-
-
-
-
-
- -

-mergeEnvVariables

-
-public static Map<String,String> mergeEnvVariables(Map<String,String> sysEnvTobeModified,
-                                                   Map<String,String> variables)
-
-
-
-
-
-
- -

-convertToAbsolute

-
-public static String convertToAbsolute(String relativePath)
-
-
-
-
-
-
- -

-getExecProperty

-
-public static String getExecProperty(String propertySpec,
-                                     Executable<?> exec)
-
-
-
-
-
-
- -

-getExecProperty

-
-public static String getExecProperty(String propertySpec,
-                                     Class<?> clazz)
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-
-
-
-
-
- -

-getFullPath

-
-public static String getFullPath(String workDirectory,
-                                 String fileName)
-
-
-
-
-
-
- -

-getCommand

-
-public static String getCommand(Executable.ExecProvider provider,
-                                Class<?> clazz)
-
-
-
-
-
-
- -

-isJavaLibrary

-
-public static boolean isJavaLibrary(Class<?> clazz)
-
-
Returns true of executableName.jar.file property has some value in the - Executable.properties file, false otherwise. -

-

-
Parameters:
clazz - -
Returns:
-
-
-
- -

-getJava

-
-public static String getJava()
-
-
Returns the absolute path to the Java executable from JAVA_HOME -

-

- -
Returns:
returns the absolute path to the Java executable from JAVA_HOME
-
-
-
- -

-getSupportedRuntimes

-
-public static Executable.ExecProvider getSupportedRuntimes(Class<?> clazz)
-
-
-
-
-
-
- -

-loadExecutable

-
-public static ConfiguredExecutable<?> loadExecutable(String taskId)
-                                              throws ResultNotAvailableException
-
-
- -
Throws: -
ResultNotAvailableException
-
-
-
- -

-getLimits

-
-public static <T> LimitsManager<T> getLimits(Class<T> clazz)
-
-
For now just assume that all parameters which came in needs setting it - will be a client responsibility to prepare RunnerConfig object then -

-

-
Parameters:
rconfig - -
Returns:
public static List toOptionString(RunnerConfig - rconfig) { String option = ""; List options = new - ArrayList(); for (Parameter par : - rconfig.getParameters()) { if (par.getPossibleValues().isEmpty()) - { option = par.getOptionName(); } else { option = - par.getOptionName() + "=" + par.getPossibleValues().get(0); } // - separate options options.add(option); } return options; }
-
-
- -
- - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - -
Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
-		 - -
- PREV CLASS  - NEXT CLASS - FRAMES   - NO FRAMES   -  - - - -
- SUMMARY: NESTED | FIELD | CONSTR | METHOD -DETAIL: FIELD | CONSTR | METHOD
- - - -
- - -