X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fengine%2Fclient%2Fclass-use%2FCommandBuilder.html;h=cd5993b19c25623ac67aa06416e1ba597706c8a3;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=663f217f14b4b687fcf502de49cbf484fc2a1d26;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/full_javadoc/compbio/engine/client/class-use/CommandBuilder.html b/website/full_javadoc/compbio/engine/client/class-use/CommandBuilder.html index 663f217..cd5993b 100644 --- a/website/full_javadoc/compbio/engine/client/class-use/CommandBuilder.html +++ b/website/full_javadoc/compbio/engine/client/class-use/CommandBuilder.html @@ -2,12 +2,12 @@ - + Uses of Class compbio.engine.client.CommandBuilder - + @@ -91,7 +91,7 @@ Packages that use compbio.engine.client -Classes and interfaces representing an input for engines.  +   compbio.runner @@ -102,6 +102,14 @@ Packages that use +compbio.runner.conservation +   + + +compbio.runner.disorder +   + + compbio.runner.msa Wrappers for native executables for multiple sequence alignment (msa)  @@ -124,40 +132,40 @@ Uses of - CommandBuilder<T> -ConfiguredExecutable.getParameters() + CommandBuilder<?> +RunConfiguration.getParameters()
            - CommandBuilder<T> -ConfExecutable.getParameters() + CommandBuilder<T> +ConfiguredExecutable.getParameters()
            - CommandBuilder<?> -RunConfiguration.getParameters() + CommandBuilder<T> +ConfExecutable.getParameters()
            - CommandBuilder<T> -SkeletalExecutable.getParameters(Executable.ExecProvider provider) + CommandBuilder<T> +Executable.getParameters(Executable.ExecProvider provider)
            - CommandBuilder<T> -Executable.getParameters(Executable.ExecProvider provider) + CommandBuilder<T> +SkeletalExecutable.getParameters(Executable.ExecProvider provider)
            @@ -180,8 +188,8 @@ Uses of newCommandBuilder(java.util.List<? extends Option<T>> arguments, - java.lang.String nameValueSeparator) +CommandBuilder.newCommandBuilder(List<? extends Option<T>> arguments, + String nameValueSeparator)
          This produces the same result as getCommands method. @@ -225,7 +233,7 @@ Uses of getParameters(Executable.ExecProvider provider)
-            +          Deprecated.     @@ -255,6 +263,56 @@ Uses of + + + + +
+Uses of CommandBuilder in compbio.runner.conservation
+  +

+ + + + + + + + + +
Methods in compbio.runner.conservation that return CommandBuilder
+ CommandBuilder<AACon>AACon.getParameters(Executable.ExecProvider provider) + +
+           
+  +

+ + + + + +
+Uses of CommandBuilder in compbio.runner.disorder
+  +

+ + + + + + + + + +
Methods in compbio.runner.disorder that return CommandBuilder
+ CommandBuilder<Jronn>Jronn.getParameters(Executable.ExecProvider provider) + +
+           
+  +

@@ -277,6 +335,14 @@ Uses of + + +
+ CommandBuilder<ClustalO>ClustalO.getParameters(Executable.ExecProvider provider) + +
+