+Uses of Interface compbio.engine.client.PipedExecutable +

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+Uses of Interface
compbio.engine.client.PipedExecutable

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+Packages that use PipedExecutable
compbio.engine.client
compbio.runner.disorder
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)

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+Uses of PipedExecutable in compbio.engine.client
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Subinterfaces of PipedExecutable in compbio.engine.client
+ interface ConfiguredExecutable<T> + +
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Subinterfaces of PipedExecutable in compbio.engine.client
+ `interface`	`ConfiguredExecutable<T>` + + +

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Classes in compbio.engine.client that implement PipedExecutable
+ class ConfExecutable<T> + +
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Classes in compbio.engine.client that implement PipedExecutable
+ `class`	`ConfExecutable<T>` + + +

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+Uses of PipedExecutable in compbio.runner.disorder
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Classes in compbio.runner.disorder that implement PipedExecutable
+ class Disembl + +
+ DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
+ class GlobPlot + +
+ ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.
+ +

Classes in compbio.runner.disorder that implement PipedExecutable
+ `class`	`Disembl` + + + DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
+ `class`	`GlobPlot` + + + ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.

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+Uses of PipedExecutable in compbio.runner.msa
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Classes in compbio.runner.msa that implement PipedExecutable
+ class Mafft + +
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+ class Probcons + +
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+ class Tcoffee + +
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+ +

Classes in compbio.runner.msa that implement PipedExecutable
+ `class`	`Mafft` + + +
+ `class`	`Probcons` + + +
+ `class`	`Tcoffee` + + +