X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fmetadata%2Fclass-use%2FLimit.html;h=1d0fc1991b6d4fa80a14debf7e104c0c1475a7bb;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=fa7ecedcdf1a963c745c2f2f323e248761b6c2a5;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/full_javadoc/compbio/metadata/class-use/Limit.html b/website/full_javadoc/compbio/metadata/class-use/Limit.html index fa7eced..1d0fc19 100644 --- a/website/full_javadoc/compbio/metadata/class-use/Limit.html +++ b/website/full_javadoc/compbio/metadata/class-use/Limit.html @@ -2,12 +2,12 @@ - + Uses of Class compbio.metadata.Limit - + @@ -91,7 +91,7 @@ Packages that use compbio.data.msa -   +Web Service interfaces for JAva Bioinformatics Analysis Web Services.  compbio.data.msa.jaxws @@ -99,7 +99,7 @@ Packages that use compbio.engine.client -Classes and interfaces representing an input for engines.  +   compbio.metadata @@ -115,14 +115,6 @@ Packages that use -compbio.runner.msa -Wrappers for native executables for multiple sequence alignment (msa)  - - -compbio.runner.psiblast -   - - compbio.ws.server    @@ -145,8 +137,8 @@ Uses of - Limit<T> -MsaWS.getLimit(java.lang.String presetName) + Limit<T> +Metadata.getLimit(String presetName)
          Get a Limit for a preset. @@ -212,7 +204,15 @@ Uses of  Limit<T> -Executable.getLimit(java.lang.String presetName) +Executable.getLimit(String presetName) + +
+            + + + + Limit<T> +SkeletalExecutable.getLimit(String presetName)
            @@ -220,7 +220,7 @@ Uses of  Limit<T> -ConfExecutable.getLimit(java.lang.String presetName) +ConfExecutable.getLimit(String presetName)
            @@ -253,7 +253,7 @@ Uses of  Limit<T> -LimitsManager.getLimitByName(java.lang.String presetName) +LimitsManager.getLimitByName(String presetName)
            @@ -268,7 +268,7 @@ Uses of - java.util.List<Limit<T>> + List<Limit<T>> LimitsManager.getLimits()
@@ -286,7 +286,7 @@ Uses of static LimitExceededException LimitExceededException.newLimitExceeded(Limit<?> limit, - java.util.List<FastaSequence> seqs) + List<FastaSequence> seqs)
            @@ -311,10 +311,10 @@ Uses of  Limit<_SkeletalCommandBuilder> -_SkeletalCommandBuilder.getLimit(java.lang.String presetName) +_SkeletalCommandBuilder.getLimit(String presetName)
-            +          Deprecated.     @@ -336,7 +336,7 @@ Uses of  Limit<NetNglyc> -NetNglyc.getLimit(java.lang.String presetName) +NetNglyc.getLimit(String presetName)
            @@ -344,11 +344,11 @@ Uses of + +Uses of Limit in compbio.ws.server
-Uses of Limit in compbio.runner.msa
  @@ -356,12 +356,12 @@ Uses of -Methods in compbio.runner.msa that return Limit +Methods in compbio.ws.server that return Limit - Limit<Tcoffee> -Tcoffee.getLimit(java.lang.String presetName) + Limit<T> +GenericMetadataService.getLimit(String presetName)
            @@ -369,15 +369,7 @@ Uses of  Limit<ClustalW> -ClustalW.getLimit(java.lang.String presetName) - -
-            - - - - Limit<Probcons> -Probcons.getLimit(java.lang.String presetName) +ClustalWS.getLimit(String presetName)
            @@ -385,7 +377,7 @@ Uses of  Limit<Muscle> -Muscle.getLimit(java.lang.String presetName) +MuscleWS.getLimit(String presetName)
            @@ -393,57 +385,15 @@ Uses of  Limit<Mafft> -Mafft.getLimit(java.lang.String presetName) - -
-            - - -  -

- - - - - -
-Uses of Limit in compbio.runner.psiblast
-  -

- - - - - - - - -
Methods in compbio.runner.psiblast that return Limit
- Limit<PsiBlast>PsiBlast.getLimit(java.lang.String presetName) +MafftWS.getLimit(String presetName)
           
-  -

- - - - - -
-Uses of Limit in compbio.ws.server
-  -

- - - - - - @@ -451,31 +401,15 @@ Uses of - - - - - - - - - - + @@ -494,20 +428,38 @@ Uses of +<T> String
Methods in compbio.ws.server that return Limit
 Limit<Tcoffee>TcoffeeWS.getLimit(java.lang.String presetName) +TcoffeeWS.getLimit(String presetName)
           		  Limit<Probcons>ProbconsWS.getLimit(java.lang.String presetName) +ProbconsWS.getLimit(String presetName)
           
- Limit<Muscle>MuscleWS.getLimit(java.lang.String presetName) - -
-           
- Limit<Mafft>MafftWS.getLimit(java.lang.String presetName) - -
-           
- Limit<ClustalW>ClustalWS.getLimit(java.lang.String presetName) + Limit<ClustalO>ClustalOWS.getLimit(String presetName)
           
-<T> java.lang.String
-WSUtil.align(java.util.List<FastaSequence> sequences, +WSUtil.align(List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, - org.apache.log4j.Logger statLog, - javax.xml.ws.WebServiceContext wsContext, - java.lang.String callingMethod, + org.apache.log4j.Logger logger, + String callingMethod, Limit<T> limit)
            + + +static + + + + +
+<T> String
+ +WSUtil.analize(List<FastaSequence> sequences, + ConfiguredExecutable<T> confExec, + org.apache.log4j.Logger log, + String method, + Limit<T> limit) + +
+            +