-Uses of Class compbio.metadata.Preset -

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-Uses of Class
compbio.metadata.Preset

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-Packages that use Preset
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.metadata	A meta-data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project.
compbio.ws.server

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-Uses of Preset in compbio.data.msa
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Methods in compbio.data.msa with parameters of type Preset
- String MsaWS.presetAlign(List<FastaSequence> sequences, - Preset<T> preset) - -
- Align a list of sequences with preset.
- String SequenceAnnotation.presetAnalize(List<FastaSequence> sequences, - Preset<T> preset) - -
- Analyse the sequences according to the preset settings.
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Methods in compbio.data.msa with parameters of type Preset
- `String`	`MsaWS.presetAlign(List<FastaSequence> sequences, - Preset<T> preset)` - - - Align a list of sequences with preset.
- `String`	`SequenceAnnotation.presetAnalize(List<FastaSequence> sequences, - Preset<T> preset)` - - - Analyse the sequences according to the preset settings.

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-Uses of Preset in compbio.data.msa.jaxws
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Methods in compbio.data.msa.jaxws that return Preset
- Preset PresetAnalize.getPreset() - -
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- Preset PresetAlign.getPreset() - -
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Methods in compbio.data.msa.jaxws that return Preset
- `Preset`	`PresetAnalize.getPreset()` - - -
- `Preset`	`PresetAlign.getPreset()` - - -

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Methods in compbio.data.msa.jaxws with parameters of type Preset
- void PresetAnalize.setPreset(Preset preset) - -
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- void PresetAlign.setPreset(Preset preset) - -
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Methods in compbio.data.msa.jaxws with parameters of type Preset
- `void`	`PresetAnalize.setPreset(Preset preset)` - - -
- `void`	`PresetAlign.setPreset(Preset preset)` - - -

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-Uses of Preset in compbio.metadata
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Methods in compbio.metadata that return Preset
- Preset<T> PresetManager.getPresetByName(String presetName) - -
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Methods in compbio.metadata that return Preset
- `Preset<T>`	`PresetManager.getPresetByName(String presetName)` - - -

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Methods in compbio.metadata that return types with arguments of type Preset
- List<Preset<T>> PresetManager.getPresets() - -
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Methods in compbio.metadata that return types with arguments of type Preset
- `List<Preset<T>>`	`PresetManager.getPresets()` - - -

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Method parameters in compbio.metadata with type arguments of type Preset
- void PresetManager.setPresets(List<Preset<T>> presets) - -
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Method parameters in compbio.metadata with type arguments of type Preset
- `void`	`PresetManager.setPresets(List<Preset<T>> presets)` - - -

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-Uses of Preset in compbio.ws.server
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Methods in compbio.ws.server with parameters of type Preset
- String ClustalOWS.presetAlign(List<FastaSequence> sequences, - Preset<ClustalO> preset) - -
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- String ClustalWS.presetAlign(List<FastaSequence> sequences, - Preset<ClustalW> preset) - -
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- String MafftWS.presetAlign(List<FastaSequence> sequences, - Preset<Mafft> preset) - -
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- String MuscleWS.presetAlign(List<FastaSequence> sequences, - Preset<Muscle> preset) - -
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- String ProbconsWS.presetAlign(List<FastaSequence> sequences, - Preset<Probcons> preset) - -
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- String _MsaService.presetAlign(List<FastaSequence> sequences, - Preset<T> preset) - -
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- String TcoffeeWS.presetAlign(List<FastaSequence> sequences, - Preset<Tcoffee> preset) - -
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- String DisemblWS.presetAnalize(List<FastaSequence> sequences, - Preset<Disembl> preset) - -
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- String GlobPlotWS.presetAnalize(List<FastaSequence> sequences, - Preset<GlobPlot> preset) - -
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- String IUPredWS.presetAnalize(List<FastaSequence> sequences, - Preset<IUPred> preset) - -
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- String SequenceAnnotationService.presetAnalize(List<FastaSequence> sequences, - Preset<T> preset) - -
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Methods in compbio.ws.server with parameters of type Preset
- `String`	`ClustalOWS.presetAlign(List<FastaSequence> sequences, - Preset<ClustalO> preset)` - - -
- `String`	`ClustalWS.presetAlign(List<FastaSequence> sequences, - Preset<ClustalW> preset)` - - -
- `String`	`MafftWS.presetAlign(List<FastaSequence> sequences, - Preset<Mafft> preset)` - - -
- `String`	`MuscleWS.presetAlign(List<FastaSequence> sequences, - Preset<Muscle> preset)` - - -
- `String`	`ProbconsWS.presetAlign(List<FastaSequence> sequences, - Preset<Probcons> preset)` - - -
- `String`	`_MsaService.presetAlign(List<FastaSequence> sequences, - Preset<T> preset)` - - -
- `String`	`TcoffeeWS.presetAlign(List<FastaSequence> sequences, - Preset<Tcoffee> preset)` - - -
- `String`	`DisemblWS.presetAnalize(List<FastaSequence> sequences, - Preset<Disembl> preset)` - - -
- `String`	`GlobPlotWS.presetAnalize(List<FastaSequence> sequences, - Preset<GlobPlot> preset)` - - -
- `String`	`IUPredWS.presetAnalize(List<FastaSequence> sequences, - Preset<IUPred> preset)` - - -
- `String`	`SequenceAnnotationService.presetAnalize(List<FastaSequence> sequences, - Preset<T> preset)` - - -