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-Uses of Class
compbio.metadata.RunnerConfig

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-Packages that use RunnerConfig
compbio.data.msaWeb Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.data.msa.jaxws  
compbio.engine.client  
compbio.metadataA meta-data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project. 
compbio.runnerUtilities commonly used by all runners. 
compbio.ws.server  
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-Uses of RunnerConfig in compbio.data.msa
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Methods in compbio.data.msa that return RunnerConfig
- RunnerConfig<T>Metadata.getRunnerOptions() - -
-          Get options supported by a web service
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-Uses of RunnerConfig in compbio.data.msa.jaxws
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Methods in compbio.data.msa.jaxws that return RunnerConfig
- RunnerConfigGetRunnerOptionsResponse.getReturn() - -
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Methods in compbio.data.msa.jaxws with parameters of type RunnerConfig
- voidGetRunnerOptionsResponse.setReturn(RunnerConfig _return) - -
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-Uses of RunnerConfig in compbio.engine.client
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Methods in compbio.engine.client that return RunnerConfig
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-<V> RunnerConfig<V>
-		ConfExecutable.getRunnerOptions(Class<? extends Executable<V>> clazz) - -
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-Uses of RunnerConfig in compbio.metadata
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Methods in compbio.metadata that return RunnerConfig
- RunnerConfig<T>RunnerConfig.copyAndValidateRConfig(RunnerConfig<?> runnerConf) - -
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Methods in compbio.metadata with parameters of type RunnerConfig
- RunnerConfig<T>RunnerConfig.copyAndValidateRConfig(RunnerConfig<?> runnerConf) - -
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- List<Option<T>>Preset.getArguments(RunnerConfig<T> rconfig) - -
-          Converts list of options as String to type Option
- voidPresetManager.validate(RunnerConfig<T> options) - -
-          Checks whether preset option and parameter are defined in RunnerConfig - object.
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-Uses of RunnerConfig in compbio.runner
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Methods in compbio.runner that return RunnerConfig
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-<T> RunnerConfig<T>
-		Util.getSupportedOptions(Class<? extends Executable<T>> clazz) - -
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Methods in compbio.runner with parameters of type RunnerConfig
-static List<String>OptionCombinator.argumentsToCommandString(List<? extends Option<?>> arguments, - RunnerConfig<? extends Executable<?>> rconfig) - -
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Constructors in compbio.runner with parameters of type RunnerConfig
OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig) - -
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-Uses of RunnerConfig in compbio.ws.server
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Methods in compbio.ws.server that return RunnerConfig
- RunnerConfig<T>GenericMetadataService.getRunnerOptions() - -
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- RunnerConfig<ClustalW>ClustalWS.getRunnerOptions() - -
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- RunnerConfig<Muscle>MuscleWS.getRunnerOptions() - -
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- RunnerConfig<Mafft>MafftWS.getRunnerOptions() - -
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- RunnerConfig<Tcoffee>TcoffeeWS.getRunnerOptions() - -
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- RunnerConfig<Probcons>ProbconsWS.getRunnerOptions() - -
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- RunnerConfig<ClustalO>ClustalOWS.getRunnerOptions() - -
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