X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fmetadata%2Fclass-use%2FRunnerConfig.html;fp=website%2Ffull_javadoc%2Fcompbio%2Fmetadata%2Fclass-use%2FRunnerConfig.html;h=21645ab405f1e66b44592ed959550ea97200b80b;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/metadata/class-use/RunnerConfig.html b/website/full_javadoc/compbio/metadata/class-use/RunnerConfig.html new file mode 100644 index 0000000..21645ab --- /dev/null +++ b/website/full_javadoc/compbio/metadata/class-use/RunnerConfig.html @@ -0,0 +1,468 @@ + + + + + + +Uses of Class compbio.metadata.RunnerConfig + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV  + NEXT + FRAMES   + NO FRAMES   +  + + + +
+ + + +
+
+

+Uses of Class
compbio.metadata.RunnerConfig

+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Packages that use RunnerConfig
compbio.data.msaWeb Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.data.msa.jaxws  
compbio.engine.client  
compbio.metadataA meta-data model for multiple sequence alignment web services + Classes in this package have no dependencies to other sources in the project. 
compbio.runnerUtilities commonly used by all runners. 
compbio.ws.server  
+  +

+ + + + + +
+Uses of RunnerConfig in compbio.data.msa
+  +

+ + + + + + + + + +
Methods in compbio.data.msa that return RunnerConfig
+ RunnerConfig<T>Metadata.getRunnerOptions() + +
+          Get options supported by a web service
+  +

+ + + + + +
+Uses of RunnerConfig in compbio.data.msa.jaxws
+  +

+ + + + + + + + + +
Methods in compbio.data.msa.jaxws that return RunnerConfig
+ RunnerConfigGetRunnerOptionsResponse.getReturn() + +
+           
+  +

+ + + + + + + + + +
Methods in compbio.data.msa.jaxws with parameters of type RunnerConfig
+ voidGetRunnerOptionsResponse.setReturn(RunnerConfig _return) + +
+           
+  +

+ + + + + +
+Uses of RunnerConfig in compbio.engine.client
+  +

+ + + + + + + + + +
Methods in compbio.engine.client that return RunnerConfig
+static + + + + +
+<V> RunnerConfig<V>
+		ConfExecutable.getRunnerOptions(Class<? extends Executable<V>> clazz) + +
+           
+  +

+ + + + + +
+Uses of RunnerConfig in compbio.metadata
+  +

+ + + + + + + + + +
Methods in compbio.metadata that return RunnerConfig
+ RunnerConfig<T>RunnerConfig.copyAndValidateRConfig(RunnerConfig<?> runnerConf) + +
+           
+  +

+ + + + + + + + + + + + + + + + + +
Methods in compbio.metadata with parameters of type RunnerConfig
+ RunnerConfig<T>RunnerConfig.copyAndValidateRConfig(RunnerConfig<?> runnerConf) + +
+           
+ List<Option<T>>Preset.getArguments(RunnerConfig<T> rconfig) + +
+          Converts list of options as String to type Option
+ voidPresetManager.validate(RunnerConfig<T> options) + +
+          Checks whether preset option and parameter are defined in RunnerConfig + object.
+  +

+ + + + + +
+Uses of RunnerConfig in compbio.runner
+  +

+ + + + + + + + + +
Methods in compbio.runner that return RunnerConfig
+static + + + + +
+<T> RunnerConfig<T>
+		Util.getSupportedOptions(Class<? extends Executable<T>> clazz) + +
+           
+  +

+ + + + + + + + + +
Methods in compbio.runner with parameters of type RunnerConfig
+static List<String>OptionCombinator.argumentsToCommandString(List<? extends Option<?>> arguments, + RunnerConfig<? extends Executable<?>> rconfig) + +
+           
+  +

+ + + + + + + + +
Constructors in compbio.runner with parameters of type RunnerConfig
OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig) + +
+           
+  +

+ + + + + +
+Uses of RunnerConfig in compbio.ws.server
+  +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Methods in compbio.ws.server that return RunnerConfig
+ RunnerConfig<T>GenericMetadataService.getRunnerOptions() + +
+           
+ RunnerConfig<ClustalW>ClustalWS.getRunnerOptions() + +
+           
+ RunnerConfig<Muscle>MuscleWS.getRunnerOptions() + +
+           
+ RunnerConfig<Mafft>MafftWS.getRunnerOptions() + +
+           
+ RunnerConfig<Tcoffee>TcoffeeWS.getRunnerOptions() + +
+           
+ RunnerConfig<Probcons>ProbconsWS.getRunnerOptions() + +
+           
+ RunnerConfig<ClustalO>ClustalOWS.getRunnerOptions() + +
+           
+  +

+

+ + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV  + NEXT + FRAMES   + NO FRAMES   +  + + + +
+ + + +
+ + +