X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fmetadata%2Fclass-use%2FWrongParameterException.html;fp=website%2Ffull_javadoc%2Fcompbio%2Fmetadata%2Fclass-use%2FWrongParameterException.html;h=4d53ad25b3500582307f52f37f6a9c5e2d05316b;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/metadata/class-use/WrongParameterException.html b/website/full_javadoc/compbio/metadata/class-use/WrongParameterException.html new file mode 100644 index 0000000..4d53ad2 --- /dev/null +++ b/website/full_javadoc/compbio/metadata/class-use/WrongParameterException.html @@ -0,0 +1,481 @@ + + + + + + +Uses of Class compbio.metadata.WrongParameterException + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV  + NEXT + FRAMES   + NO FRAMES   +  + + + +
+ + + +
+
+

+Uses of Class
compbio.metadata.WrongParameterException

+
+ + + + + + + + + + + + + + + + + +
+Packages that use WrongParameterException
compbio.data.msaWeb Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.metadataA meta-data model for multiple sequence alignment web services + Classes in this package have no dependencies to other sources in the project. 
compbio.ws.server  
+  +

+ + + + + +
+Uses of WrongParameterException in compbio.data.msa
+  +

+ + + + + + + + + + + + + + + + + + + + + +
Methods in compbio.data.msa that throw WrongParameterException
+ StringMsaWS.customAlign(List<FastaSequence> sequences, + List<Option<T>> options) + +
+          Align a list of sequences with options.
+ StringSequenceAnnotation.customAnalize(List<FastaSequence> sequences, + List<Option<T>> options) + +
+          Analyse the sequences according to custom settings defined in options + list.
+ StringMsaWS.presetAlign(List<FastaSequence> sequences, + Preset<T> preset) + +
+          Align a list of sequences with preset.
+ StringSequenceAnnotation.presetAnalize(List<FastaSequence> sequences, + Preset<T> preset) + +
+          Analyse the sequences according to the preset settings.
+  +

+ + + + + +
+Uses of WrongParameterException in compbio.metadata
+  +

+ + + + + + + + + + + + + + + + + + + + + + + + + +
Methods in compbio.metadata that throw WrongParameterException
+ List<Option<T>>Preset.getArguments(RunnerConfig<T> rconfig) + +
+          Converts list of options as String to type Option
+ voidParameter.setDefaultValue(String defaultVal) + +
+           
+ voidOption.setDefaultValue(String defaultVal) + +
+          Sets one of the values defined in optionList as default.
+ voidArgument.setValue(String defaultValue) + +
+          Set default values for the parameter or an option
+ voidOption.setValue(String dValue) + +
+           
+  +

+ + + + + +
+Uses of WrongParameterException in compbio.ws.server
+  +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Methods in compbio.ws.server that throw WrongParameterException
+ StringClustalOWS.customAlign(List<FastaSequence> sequences, + List<Option<ClustalO>> options) + +
+           
+ StringClustalWS.customAlign(List<FastaSequence> sequences, + List<Option<ClustalW>> options) + +
+           
+ StringMafftWS.customAlign(List<FastaSequence> sequences, + List<Option<Mafft>> options) + +
+           
+ StringMuscleWS.customAlign(List<FastaSequence> sequences, + List<Option<Muscle>> options) + +
+           
+ StringProbconsWS.customAlign(List<FastaSequence> sequences, + List<Option<Probcons>> options) + +
+           
+ String_MsaService.customAlign(List<FastaSequence> sequences, + List<Option<T>> options) + +
+           
+ StringTcoffeeWS.customAlign(List<FastaSequence> sequences, + List<Option<Tcoffee>> options) + +
+           
+ StringDisemblWS.customAnalize(List<FastaSequence> sequences, + List<Option<Disembl>> options) + +
+           
+ StringGlobPlotWS.customAnalize(List<FastaSequence> sequences, + List<Option<GlobPlot>> options) + +
+           
+ StringSequenceAnnotationService.customAnalize(List<FastaSequence> sequences, + List<Option<T>> options) + +
+           
+ StringClustalOWS.presetAlign(List<FastaSequence> sequences, + Preset<ClustalO> preset) + +
+           
+ StringClustalWS.presetAlign(List<FastaSequence> sequences, + Preset<ClustalW> preset) + +
+           
+ StringMafftWS.presetAlign(List<FastaSequence> sequences, + Preset<Mafft> preset) + +
+           
+ StringMuscleWS.presetAlign(List<FastaSequence> sequences, + Preset<Muscle> preset) + +
+           
+ StringProbconsWS.presetAlign(List<FastaSequence> sequences, + Preset<Probcons> preset) + +
+           
+ String_MsaService.presetAlign(List<FastaSequence> sequences, + Preset<T> preset) + +
+           
+ StringTcoffeeWS.presetAlign(List<FastaSequence> sequences, + Preset<Tcoffee> preset) + +
+           
+ StringDisemblWS.presetAnalize(List<FastaSequence> sequences, + Preset<Disembl> preset) + +
+           
+ StringGlobPlotWS.presetAnalize(List<FastaSequence> sequences, + Preset<GlobPlot> preset) + +
+           
+ StringIUPredWS.presetAnalize(List<FastaSequence> sequences, + Preset<IUPred> preset) + +
+           
+ StringSequenceAnnotationService.presetAnalize(List<FastaSequence> sequences, + Preset<T> preset) + +
+           
+  +

+

+ + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package  Class   Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV  + NEXT + FRAMES   + NO FRAMES   +  + + + +
+ + + +
+ + +