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-Uses of Package
compbio.metadata

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-Packages that use compbio.metadata
compbio.data.msaWeb Service interfaces for JAva Bioinformatics Analysis Web Services. 
compbio.data.msa.jaxws  
compbio.engine  
compbio.engine.client  
compbio.engine.cluster.drmaa  
compbio.engine.local  
compbio.metadataA meta-data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project. 
compbio.runnerUtilities commonly used by all runners. 
compbio.runner._impl  
compbio.runner.conservation  
compbio.runner.disorder  
compbio.runner.msaWrappers for native executables for multiple sequence alignment (msa) 
compbio.ws.server  
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-Classes in compbio.metadata used by compbio.data.msa
ChunkHolder - -
-          Represents a chunk of a string data together with the position in a file for - the next read operation.
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitExceededException - -
-          This exception is thrown if the task larger in size that the limit that - applies to the calculation.
LimitsManager - -
-          A collection of Limits
Option - -
-          Command line option/flag or multiple exclusive options with no value.
Preset - -
-          Collection of Options and Parameters with their values
PresetManager - -
-          Collection of presets and methods to manipulate them @see Preset
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
RunnerConfig - -
-          The list of Parameters and Options supported by executable.
UnsupportedRuntimeException - -
-          Indicates that the server could not execute native executables.
WrongParameterException - -
-          WrongParameterException is thrown wherever the RunnerConfig object - does not match the actual runnable or then attempting to set the value of - Argument to invalid value.
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-Classes in compbio.metadata used by compbio.data.msa.jaxws
ChunkHolder - -
-          Represents a chunk of a string data together with the position in a file for - the next read operation.
JobStatus - -
-          The status of the job.
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitsManager - -
-          A collection of Limits
Option - -
-          Command line option/flag or multiple exclusive options with no value.
Preset - -
-          Collection of Options and Parameters with their values
PresetManager - -
-          Collection of presets and methods to manipulate them @see Preset
RunnerConfig - -
-          The list of Parameters and Options supported by executable.
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-Classes in compbio.metadata used by compbio.engine
ChunkHolder - -
-          Represents a chunk of a string data together with the position in a file for - the next read operation.
JobExecutionException - -
-          JobExecutionException is thrown wherever the results of the calculation - cannot be obtained.
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
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-Classes in compbio.metadata used by compbio.engine.client
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitsManager - -
-          A collection of Limits
Option - -
-          Command line option/flag or multiple exclusive options with no value.
PresetManager - -
-          Collection of presets and methods to manipulate them @see Preset
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
RunnerConfig - -
-          The list of Parameters and Options supported by executable.
UnsupportedRuntimeException - -
-          Indicates that the server could not execute native executables.
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-Classes in compbio.metadata used by compbio.engine.cluster.drmaa
JobExecutionException - -
-          JobExecutionException is thrown wherever the results of the calculation - cannot be obtained.
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
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-Classes in compbio.metadata used by compbio.engine.local
JobExecutionException - -
-          JobExecutionException is thrown wherever the results of the calculation - cannot be obtained.
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
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-Classes in compbio.metadata used by compbio.metadata
Argument - -
-          An unmodifiable view for the options and parameters, with one exception - it - allows to set a value
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitExceededException - -
-          This exception is thrown if the task larger in size that the limit that - applies to the calculation.
Option - -
-          Command line option/flag or multiple exclusive options with no value.
Parameter - -
-          A single value containing an option supported by the web service e.g.
Preset - -
-          Collection of Options and Parameters with their values
PresetManager - -
-          Collection of presets and methods to manipulate them @see Preset
RunnerConfig - -
-          The list of Parameters and Options supported by executable.
ValueConstrain - -
-          The type and the lower and upper boundaries for numerical value.
ValueConstrain.Type - -
-           
WrongParameterException - -
-          WrongParameterException is thrown wherever the RunnerConfig object - does not match the actual runnable or then attempting to set the value of - Argument to invalid value.
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-Classes in compbio.metadata used by compbio.runner
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitsManager - -
-          A collection of Limits
Option - -
-          Command line option/flag or multiple exclusive options with no value.
Parameter - -
-          A single value containing an option supported by the web service e.g.
PresetManager - -
-          Collection of presets and methods to manipulate them @see Preset
RunnerConfig - -
-          The list of Parameters and Options supported by executable.
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-Classes in compbio.metadata used by compbio.runner._impl
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitsManager - -
-          A collection of Limits
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-Classes in compbio.metadata used by compbio.runner.conservation
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
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-Classes in compbio.metadata used by compbio.runner.disorder
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
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- - - - - - - - -
-Classes in compbio.metadata used by compbio.runner.msa
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
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-Classes in compbio.metadata used by compbio.ws.server
ChunkHolder - -
-          Represents a chunk of a string data together with the position in a file for - the next read operation.
JobStatus - -
-          The status of the job.
JobSubmissionException - -
-          Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
Limit - -
-          A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
LimitExceededException - -
-          This exception is thrown if the task larger in size that the limit that - applies to the calculation.
LimitsManager - -
-          A collection of Limits
Option - -
-          Command line option/flag or multiple exclusive options with no value.
Preset - -
-          Collection of Options and Parameters with their values
PresetManager - -
-          Collection of presets and methods to manipulate them @see Preset
ResultNotAvailableException - -
-          ResultNotAvailableException is thrown wherever the results of the calculation - cannot be obtained.
RunnerConfig - -
-          The list of Parameters and Options supported by executable.
UnsupportedRuntimeException - -
-          Indicates that the server could not execute native executables.
WrongParameterException - -
-          WrongParameterException is thrown wherever the RunnerConfig object - does not match the actual runnable or then attempting to set the value of - Argument to invalid value.
-  -

-

- - - - - - - - - - - - - - - -
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