X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fpipeline%2F_jpred%2FJpred4.html;fp=website%2Ffull_javadoc%2Fcompbio%2Fpipeline%2F_jpred%2FJpred4.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=5522fc00c447e9852439d1e33f10184950f42962;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/pipeline/_jpred/Jpred4.html b/website/full_javadoc/compbio/pipeline/_jpred/Jpred4.html deleted file mode 100644 index 5522fc0..0000000 --- a/website/full_javadoc/compbio/pipeline/_jpred/Jpred4.html +++ /dev/null @@ -1,277 +0,0 @@ - - - - - - -Jpred4 - - - - - - - - - - - - -
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- -compbio.pipeline._jpred -
-Class Jpred4

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-java.lang.Object
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public class Jpred4
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-jpred --sequence OR --alignment [--db - ] [--pred-nohits] [--logLevel=(ERROR|INFO|DEBUG)] [--help] - - jpred4 --sequence The path to the sequence (in FASTA format) you - want to predict OR - - [--alignment ] The alignment which to use for prediction - - [--profile=] - - [--db ] Database to use for PSI-BLAST querying. Default: uniref90 ( - /homes/www-jpred/databases/uniref90.filt) Please note that database must be - psi-blast indexed - - [--pred-nohits] Toggle allowing Jpred to make predictions even when there are - no PSI-BLAST hits. - - [--logLevel=(ERROR|INFO|DEBUG)] one of ERROR, INFO, DEBUG [--help] -

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Author:
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pvtroshin
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-Constructor Summary
Jpred4() - -
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-Method Summary
- voidrunPsiBlast() - -
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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-Jpred4

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-public Jpred4()
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-runPsiBlast

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-public void runPsiBlast()
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