X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2FOptionCombinator.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2FOptionCombinator.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=ef3a2d5d2e3af5375870bcf5421fb8c0e5fec952;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/OptionCombinator.html b/website/full_javadoc/compbio/runner/OptionCombinator.html deleted file mode 100644 index ef3a2d5..0000000 --- a/website/full_javadoc/compbio/runner/OptionCombinator.html +++ /dev/null @@ -1,421 +0,0 @@ - - - - - - -OptionCombinator - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - -
- -
- - - -
- -

- -compbio.runner -
-Class OptionCombinator

-
-java.lang.Object
-  extended by compbio.runner.OptionCombinator
-
-
-
-
@Immutable
-public final class OptionCombinator
extends Object
- - -

-This class solve the following problems. Given the RunnerConfig - - 1) generate a valid option string with all options and parameters in it - - 2) Permute all possible combinations of options order and parameters values -

- -

-

-
Author:
-
pvtroshin
-
-
- -

- - - - - - - - - - - -
-Constructor Summary
OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig) - -
-           
-  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-Method Summary
- List<String>argumentsToCommandString(List<? extends Option<?>> arguments) - -
-           
-static List<String>argumentsToCommandString(List<? extends Option<?>> arguments, - RunnerConfig<? extends Executable<?>> rconfig) - -
-           
- Map<Parameter<?>,String>getAllConstrainedParametersWithBorderValues(boolean minValue) - -
-           
- Map<Parameter<?>,String>getAllConstrainedParametersWithRandomValues() - -
-           
- List<Option<?>>getAllOptions() - -
-           
- List<Parameter<?>>getAllParameters() - -
-           
- List<String>getOptionsAtRandom() - -
-           
- List<String>optionsToCommandString(List<Option<?>> options) - -
-           
- List<String>parametersToCommandString(List<Parameter<?>> orderedList, - Map<Parameter<?>,String> prmValue) - -
-           
- - - - - - - -
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
-  -

- - - - - - - - -
-Constructor Detail
- -

-OptionCombinator

-
-public OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig)
-
-
- - - - - - - - -
-Method Detail
- -

-optionsToCommandString

-
-public List<String> optionsToCommandString(List<Option<?>> options)
-
-
-
-
-
-
- -

-getOptionsAtRandom

-
-public List<String> getOptionsAtRandom()
-
-
-
-
-
-
- -

-getAllOptions

-
-public List<Option<?>> getAllOptions()
-
-
-
-
-
-
- -

-getAllParameters

-
-public List<Parameter<?>> getAllParameters()
-
-
-
-
-
-
- -

-argumentsToCommandString

-
-public List<String> argumentsToCommandString(List<? extends Option<?>> arguments)
-
-
-
-
-
-
- -

-argumentsToCommandString

-
-public static List<String> argumentsToCommandString(List<? extends Option<?>> arguments,
-                                                    RunnerConfig<? extends Executable<?>> rconfig)
-
-
-
-
-
-
- -

-parametersToCommandString

-
-public List<String> parametersToCommandString(List<Parameter<?>> orderedList,
-                                              Map<Parameter<?>,String> prmValue)
-
-
-
-
-
-
- -

-getAllConstrainedParametersWithBorderValues

-
-public Map<Parameter<?>,String> getAllConstrainedParametersWithBorderValues(boolean minValue)
-
-
-
-
-
-
- -

-getAllConstrainedParametersWithRandomValues

-
-public Map<Parameter<?>,String> getAllConstrainedParametersWithRandomValues()
-
-
-
-
-
- -
- - - - - - - - - - - - - - - - - - - -
- -
- - - -
- - -