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+ + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
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+ +

+ +compbio.runner +
+Class OptionCombinator

+
+java.lang.Object
+  extended by compbio.runner.OptionCombinator
+
+
+
+
@Immutable
+public final class OptionCombinator
extends Object
+ + +

+This class solve the following problems. Given the RunnerConfig + + 1) generate a valid option string with all options and parameters in it + + 2) Permute all possible combinations of options order and parameters values +

+ +

+

+
Author:
+
pvtroshin
+
+
+ +

+ + + + + + + + + + + +
+Constructor Summary
OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig) + +
+           
+  + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Method Summary
+ List<String>argumentsToCommandString(List<? extends Option<?>> arguments) + +
+           
+static List<String>argumentsToCommandString(List<? extends Option<?>> arguments, + RunnerConfig<? extends Executable<?>> rconfig) + +
+           
+ Map<Parameter<?>,String>getAllConstrainedParametersWithBorderValues(boolean minValue) + +
+           
+ Map<Parameter<?>,String>getAllConstrainedParametersWithRandomValues() + +
+           
+ List<Option<?>>getAllOptions() + +
+           
+ List<Parameter<?>>getAllParameters() + +
+           
+ List<String>getOptionsAtRandom() + +
+           
+ List<String>optionsToCommandString(List<Option<?>> options) + +
+           
+ List<String>parametersToCommandString(List<Parameter<?>> orderedList, + Map<Parameter<?>,String> prmValue) + +
+           
+  + + + + + + + +
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
+  +

+ + + + + + + + +
+Constructor Detail
+ +

+OptionCombinator

+
+public OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig)
+
+
+ + + + + + + + +
+Method Detail
+ +

+optionsToCommandString

+
+public List<String> optionsToCommandString(List<Option<?>> options)
+
+
+
+
+
+
+ +

+getOptionsAtRandom

+
+public List<String> getOptionsAtRandom()
+
+
+
+
+
+
+ +

+getAllOptions

+
+public List<Option<?>> getAllOptions()
+
+
+
+
+
+
+ +

+getAllParameters

+
+public List<Parameter<?>> getAllParameters()
+
+
+
+
+
+
+ +

+argumentsToCommandString

+
+public List<String> argumentsToCommandString(List<? extends Option<?>> arguments)
+
+
+
+
+
+
+ +

+argumentsToCommandString

+
+public static List<String> argumentsToCommandString(List<? extends Option<?>> arguments,
+                                                    RunnerConfig<? extends Executable<?>> rconfig)
+
+
+
+
+
+
+ +

+parametersToCommandString

+
+public List<String> parametersToCommandString(List<Parameter<?>> orderedList,
+                                              Map<Parameter<?>,String> prmValue)
+
+
+
+
+
+
+ +

+getAllConstrainedParametersWithBorderValues

+
+public Map<Parameter<?>,String> getAllConstrainedParametersWithBorderValues(boolean minValue)
+
+
+
+
+
+
+ +

+getAllConstrainedParametersWithRandomValues

+
+public Map<Parameter<?>,String> getAllConstrainedParametersWithRandomValues()
+
+
+
+
+
+ +
+ + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV CLASS  + NEXT CLASS + FRAMES   + NO FRAMES   +  + + + +
+ SUMMARY: NESTED | FIELD | CONSTR | METHOD +DETAIL: FIELD | CONSTR | METHOD
+ + + +
+ + +