X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2FUtil.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2FUtil.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=8db9c58c38d9e78c381f9bb6c2dc41c175604769;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/Util.html b/website/full_javadoc/compbio/runner/Util.html deleted file mode 100644 index 8db9c58..0000000 --- a/website/full_javadoc/compbio/runner/Util.html +++ /dev/null @@ -1,423 +0,0 @@ - - - - - - -Util - - - - - - - - - - - - -
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- -compbio.runner -
-Class Util

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-java.lang.Object
-  extended by compbio.runner.Util
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public final class Util
extends Object
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-Field Summary
-static org.apache.log4j.Loggerlog - -
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-static StringSPACE - -
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-Constructor Summary
Util() - -
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-Method Summary
-static - - - - -
-<T> PresetManager<T>
-		getPresets(Class<? extends Executable<T>> clazz) - -
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-static - - - - -
-<T> RunnerConfig<T>
-		getSupportedOptions(Class<? extends Executable<T>> clazz) - -
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-static AlignmentreadClustalFile(String workDirectory, - String clustFile) - -
-           
-static Map<String,Score>readJronnFile(String workDirectory, - String clustFile) - -
-           
-static voidwriteInput(List<FastaSequence> sequences, - ConfiguredExecutable<?> exec) - -
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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-Field Detail
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-log

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-public static org.apache.log4j.Logger log
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-SPACE

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-public static final String SPACE
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See Also:
Constant Field Values
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-Constructor Detail
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-Util

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-public Util()
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-Method Detail
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-getSupportedOptions

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-public static <T> RunnerConfig<T> getSupportedOptions(Class<? extends Executable<T>> clazz)
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-getPresets

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-public static <T> PresetManager<T> getPresets(Class<? extends Executable<T>> clazz)
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-readClustalFile

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-public static final Alignment readClustalFile(String workDirectory,
-                                              String clustFile)
-                                       throws UnknownFileFormatException,
-                                              IOException,
-                                              FileNotFoundException,
-                                              NullPointerException
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Throws: -
UnknownFileFormatException -
IOException -
FileNotFoundException -
NullPointerException
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-readJronnFile

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-public static final Map<String,Score> readJronnFile(String workDirectory,
-                                                    String clustFile)
-                                             throws UnknownFileFormatException,
-                                                    IOException,
-                                                    FileNotFoundException,
-                                                    NullPointerException
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Throws: -
UnknownFileFormatException -
IOException -
FileNotFoundException -
NullPointerException
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-writeInput

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-public static void writeInput(List<FastaSequence> sequences,
-                              ConfiguredExecutable<?> exec)
-                       throws JobSubmissionException
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Throws: -
JobSubmissionException
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Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
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