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- -compbio.runner._impl -
-Class BlastAll

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-java.lang.Object
-  extended by compbio.runner._SkeletalCommandBuilder
-      extended by compbio.runner._impl.BlastAll
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All Implemented Interfaces:
Executable<_SkeletalCommandBuilder>
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public class BlastAll
extends _SkeletalCommandBuilder
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-Nested Class Summary
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Nested classes/interfaces inherited from interface compbio.engine.client.Executable
Executable.ExecProvider
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-Constructor Summary
BlastAll(String workDirectory) - -
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-Method Summary
- StringgetCommand(Executable.ExecProvider provider) - -
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Methods inherited from class compbio.runner._SkeletalCommandBuilder
addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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-Constructor Detail
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-BlastAll

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-public BlastAll(String workDirectory)
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-Method Detail
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-removeOutput

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-public boolean removeOutput(String outfile)
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-getCommand

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-public String getCommand(Executable.ExecProvider provider)
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-getCommandName

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-public String getCommandName()
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-getCreatedFiles

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-public List<String> getCreatedFiles()
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-getInput

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-public String getInput()
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